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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR477c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		exosome_complex_exonuclease_Rrp40_[Bombyx_mori]
Ontology
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000467 P exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0045190 P isotype switching
GO:0045830 P positive regulation of isotype switching
GO:0071034 P CUT catabolic process
GO:0071035 P nuclear polyadenylation-dependent rRNA catabolic process
GO:0071038 P nuclear polyadenylation-dependent tRNA catabolic process
GO:0071049 P nuclear mRNA surveillance
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
Transcript
Level		FPKM:8.98 TPM:8.80
ORF EntryO_TrvaFAMAMG238_complete:A_TrvaFAMAMG_TR477c0_g1_i1
Sequence
(Nucleotide)
TTTTGAGGTTAGAAATTTATCAAATTGTTTTTCTTGCTAATAAAACTTAAAATTGACTAA
ATATCGCAAAACATTACAATGAAAGTATCAGTGAACGATGTAGTATTACCCGGAGACATT
TGTCCAGAAATTGCGACAGCAGGCGAAAAAGGAAAAGTCCTACTAGGACCAGGCTTGCGC
AAAGAACTCAATGGTGTTTTCATAACAAAACCAGGGTTGTTACGGAAACGACCACCTAAT
ACATACTGGGTAGACAATTATCAGAAGCGCTACGTGCCCGCTCGCGGTGAAAACGTCATC
GGAACAGTAATACAAAAGGCGGGAGATATATTCAGAGTCGATGTCGGAGGAAGTTGCCCT
GCATCGCTTTCGTACCTTTCCTTCGAAGGCGCAACAAAGAAAAACCGGCCAGCAGTGAAA
ATAGGGGACGTTGTATACGCCAAAATGTTAAACGCAAGCAAAGATATGGAACCGGAATTG
ATTTGTGTGGATTCTACTGGGAAAAAGGGTCGTTTAGGTATACTAGAAGATGGCTTCGTT
TTTAAATGCTCATTGAATTTAATCAGAAAAATATTAAATCCAGACTGCCCATTATTAAAC
TCTTTAAAGAATGAGTGGCCTTTCGAATTGGCTGCTGGAATGAACGGAAGAATATGGATA
AAAGCGAACACAATGAGAGAAACACTGGCTTTAGGAAATGCTATTTTAGGCTCAGAGTAT
TTGAGTAATGATGAAATTAAAAGTATGTGCAAGAATATAGCAATTTTACTGGCCGGTCAT
ATTAGTTGAATAAAGTACTGTTATTTTATTAAAAAAAAAAAAA
(823 bp)

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