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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR38c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_cytoplasmic_polyadenylation_element-binding_protein_2_isoform_X1_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0000900 F translation repressor activity, mRNA regulatory element binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003729 F mRNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006412 P translation
GO:0007141 P male meiosis I
GO:0007283 P spermatogenesis
GO:0007288 P sperm axoneme assembly
GO:0007291 P sperm individualization
GO:0007616 P long-term memory
GO:0008049 P male courtship behavior
GO:0008135 F translation factor activity, RNA binding
GO:0008356 P asymmetric cell division
GO:0017148 P negative regulation of translation
GO:0043022 F ribosome binding
GO:0043679 C axon terminus
GO:0044292 C dendrite terminus
GO:0044297 C cell body
GO:0045202 C synapse
GO:0048471 C perinuclear region of cytoplasm
GO:1990124 C messenger ribonucleoprotein complex
GO:2000766 P negative regulation of cytoplasmic translation
Transcript
Level		FPKM:7.39 TPM:7.24
ORF EntryO_TrvaFAMAMG106_5prime_partial:A_TrvaFAMAMG_TR38c0_g2_i1
Sequence
(Nucleotide)
TTTTTTTTCAAAGATTTAATGGACTAATATTTAGTAAAATACCATATCGTAATAATAAAA
AATTCATATAAAAATTCAAGTGATTCTCAATTTTACAATACATAGGTAACTAATGCTTGC
CGGGAAAAGTTTGCTTAGATTAATTTCTATTGAAAATTGAAAGAAATGATTGCGTGCTAT
TTCTTAGATTTTTTGACAATTTGTAACATTTTTTTTAAATTTTTGTATTTTATCGTTATC
AATTTCTTTAAAATTACCTTCCCAGCAAACCGTGAATTCTAACGCTATTCAAAAAAACAA
ATAACATCTAAAACAAAATGTAAATATTACTATTAATAAAACATTTTACATAGATACATA
AAATGATTATAAACATGCATTTCGACCGTAGTTTCGTTCTGACAATACAATCATTTACAA
AAACACGGTTAAAATGATTAAATATATTTTTTAAATAAATACGGTAAAGCTCCGTTAACG
TCAATTCTACATATTGCGTTTAAACAAACACTAATCTATTATTCGAATTACAATATATAA
ATATATCTTATTATTACAGCCAACGTGCATTATTTCCAATCGGCAAAGCTTAGTCTAGAT
TGCAGTGTAAATACATACAAAAAAATACTGAAAAAAATTAAAACTAAAGTCTACAAAATC
CTATTAAAAACAAATTACAAAATATAAAAATTACAAAAATAAAACGGGTAAAAAAATAAA
ATAGGTAAGTCAAAATATATCAAAAGCTGGTGTCAAATAAAAAGCCACTCTCATTGAATC
AAGTAGGAATACGAATATTTGTCGACTCAAGAGGTAACAAACTGACAAAACATATCTCAG
ATAGTTATTTCAAAATCTCCATGGACAGTTAAAATGTAGTAAAATTAAATGGAAAATTTT
GGAATGAGTCGACAATCTGTCTTTTGGTTGAAACGTCTTTGGATCACGCTCCCTCTTTGG
TCAAAACTACATCTTAACTCCGAAAGTGTATTCAAAATAAACAAAATCCATAGTCAAAAC
AAACACAGGAAAAAGTTTCAAATTCATTTTAATAGTTTTCACAATAGTCTAAAATAATTC
ATAGGCATTTTAATAAAATTGAATTAAACCGTTATAAAAGCAGATTAAAATTTGATATAA
CGCCAATAAAGATAATTATTTAAAGGTGAAAAAAAAAGATTACACATCATCGAATGCTAA
ACTTAAACTCAATCAGCCTCAAGGTACAATAGTCTGGTTCGATTTTGCAAAACATAGTGA
TCCTTTCACTCATCATCGACTCCCTTCAATCCGTGGCTCATTTTAGCTAAATTTCAAAAT
TCAATCCTATGTTTGATCGACAAGCAAAAAGACCATGACATTTTGCTGTTTGGTGCTTAT
CGCTAGAGGAAAGCTTAAAAATTAATCTTAATTACATATTTTCTCACTAAGTTGTCACTA
GGTAAAATTGTTTTAAGAAAAAAACTAAATCGAACCAAACAAAATACCTATACGACTGTT
GCCAATGAAATAAATAGGATCATATTGAACAAAATTGATTCTATTAAACACTTGCCAGGA
ATAATGGATCTAAAAAAATATATTATAATTTTTAGTTGAAGTTAAATTAATAATGTCGTC
ATCTCGAATCTAAAACATTCAATACGGAAAATCAACTTTATGTACACCGTTGCTCGGCTG
AAAAGCACAATTATTATTTGCTTTCGAAGCAACAAAATTAGTAATAAAAGTTGATCTTCA
GTAAATTTAAGTACACATCAAATTGCAAATCATTATCGTTAGAGACGACGACTACAAAAA
CTTGGTAAGAAAATAATTTTAAATGCACCATTCGCTGCGTGAATCTTTAAGAAAATTCAG
AATTATTAGAAAATACAGTGAAAAAACCCTCAATAAAATCACTAGATGTCAAGTCTGATA
GCTGCCTAAAATAGTATAGCATTGTAACCAAATAGCAACACTGCATTCCCGGCTGTCAAG
ACTTGAAACCTCGCGCGCTGTAACGGTGCGAACCGATGTTAAAGTAAACAAAGTAAAAAC
ATTTGTCTAATTTCAATACTCATTTAGATACTATTTTTATTTAATTTTCAAATACTCAAC
TAGTTAATGAATCTACACTTTTCTATCTTCGTATTATTTATTTAAGTATATAAATCGTTC
AAATTTTCACTAAAATATTCTAGCACGAGAGAACATTGGTTTCTCGTTCGCGCAAACGCT
AAATACGAAAAATTCACTAATACGCCGATCCGCTCCGATTTAGAAGTATCAAAAAAATTT
ACTTTTTTTACGGTTTTTAATTTTTTTTTTCTAGGAAATCCAACGATTCTATGTACATGC
AAGTGAAATGGTGCGAAACTCTCACTCAGAGAACGACGAGGGGACGTACACTTTCATAAC
AACAACAATTCGAAAGTTCATTTTAGCTAAAAAGTACAAATTTCATTTCAAAAAATGTAT
ATATAAGAAATTCTTTAAATATATTAAATACAATATTATAATAATTATACGTATGACAAA
CTGCCCCCCGCAGTGCGAACTTCACTCTGTGATATGCCATACAAAATTATCCAAACAATA
TTCATAATAATATTACACACATAGATAAACAGACAACATACAACAATAAAGGAGGGAAAC
GATAAAATATCGAAACGACCAGCGCCCTCGCCGAAACGTGCCTCAATTTTTCCATCGCAG
CTTCAACACCTCCAATAAACCGCTTTAGAGCGAATAAATAAAAAGGAAATAAACGAACCT
ACAAACTAACAAGACAAGCCTCGCAGTGGAAAACTTAAACATCCCTCGAAATTAACTGAA
AAAGACCATTCAAAATTCTATGACAAAAACTGCGAGACCAAGTAACAAATTCAAAAAGCG
GGAAGAAACTTTCCCCCGTGAATGTCAAACGTAAAACAATACAAATATCTTCTAAACAGT
AGTAAGCCTTTAGCTTCTAGACGCCTCTCATCCAACGCCCGCAGAATCTTTTCAGAATAT
TGAACCGACATCTCCTTACTCGCACATCACATCAATGGGAGAATTATTTCCATTCATTTA
AACAACCGCATCCACAAAGCGTATCAACGCCGCGCGTTTCAAAATAAAAAGAATCTCGTC
CGAATCATATTTTACACAATCATCGATTTTTTTTATAAAAATACAAAAATACAAAATGGG
ATAGTGCTATACGACACACACACAACACACTCAAGCGTCTCGCCACTGTTTATTTTCAAC
TAGGAGGTTAGGGGGCATGAATTCGACAATAAATATTTGAGCAATCCCACTAAAATAAAG
AGTAATGACTGGTAACGTAACTACCTAATGCACGCACAAACCCCGGAAAATCAAAGTGTT
GCAAGGAATAAATTTTAAAATCTACTACAAAAATAATGTGTTGAGTGAGAACAAGAATGA
TCGCGTCCACATCGCGTCGCATCAAGTATTTTATTAAATAAAGAGCGTTTATCAAAGGCG
TGATTTTAAAAATTTAATCTATAGTTAACTTTTAATTAATTATTACGAGAAAAACTTGCA
CATACGCCACTCGTATTTACCAAAACAAACTATCAATTTCACTACAGCGGCGTCAACCGC
GTCCACACGCGTACTGTGAAACTTTTCCTATTGAAACTCAACTATAATTAAATTATCTAA
ATTCTAAGAAAATATATAAATATTACTAAATTTCTATATAGGGTGAGTGTGTCATAATAT
TATGACCAGAAAAGTTTCCCAGTACGATTCACCTATGGCAATTTCACTAAAATGCTCTAA
TAAATACAATTGTATCTACTTAATAGTAAGAAAAATCTTTCTAATAGGTGTTCTTTAAAC
CCATAATGTAGGTGAACTTTCAAAAATAGATGCCTATTTTAATAAAAGCAGTTAAATATC
ATTGACACTAAGTAAAATCTGGTAACGGTCGATTATAGAGAACATTGGCGACGCTCTATA
AGGAACTAATAGGTACGCAAATCTATGAAACTAGATCGTCAAAACCCTCTCCTTTCACAC
AACATTCGACAAAAAGTGAAATCCTAGTAGATACTTCTGGTAAATATAGTATGGGACGTC
ATAAATTGGACAGTTGATGTTTCCAGTGAAAAGGAAAACTAGAAATGTAGTCCTATTTAC
CGCATGAAGTTTCTACTCAAAAACTAATTCGGGAGGGGCAACACCAACATGTACGCACAC
AAAAAGGCACGCTTCGAACCTAAATCTTCGAACACTAATACTCTCCCGAAACTATCGAAA
AAATTATCAAAAATTCGCGAGTCTTTTAACTACAGTCTATAATGTCCGTGGTCATTCGTG
GATACAAACCGACGATATTAAGTACTTGACGAGCTACCCAATACAATCAAGCCTTAAGTG
CGTATTGTACCAACTCTTAGCATAGAACCGACATGTTTTAGTTTAAATTTTCAAGCCTAG
TTTAATGGGGCTTGTTATATTACAATACGCACATCGAACTGCTGACGCAAGCACAACTCA
AATCGAATGAATTTTAGACCCCGAATGCAAATCTTCCACAAGTAGAAAGTATAATTGGTC
CTCTAAATTTAATATAGAAAAATAAGTCTCGGGCGATTTGCTACATTTACACAGGGAAAA
AAATCAGCCTCTGTGTTTTAGAGTCTTCGATTCTAAGTTATTTTGTATCTTAGTTGCAAA
TCGCCAACGACACCAAAATTATCGCTAATTCACACCAAACCACAACGAAATTAAACAAAA
ACATCTACATACACACAAATCTAAATTATATTTTCTGTGCATATAAAACCTTGCCAAGAA
AAATTTAACTACAAATTTTTAAAAAGATCAACATGAAGTTGTTGTATATTATGCTATTTA
TAAGAATTTTATTATAATTAACACGGGATAAAGATTGGCACAGGAGTAAAACTGATAAAT
AGCTATTTTGTTAGGAACATGTCTGATGCATCAAGAGTTTTGTGCACTTTCTCAAATTCT
TATTAGTCTTGCTCCTGTGTCATTCTTCAGTCCTTTTCTAATTAAATTATCATTATGTAA
ATAGTAATAAAATCCAATTTCACTAATGCAACTAAGTTCAATCACGACAAAACAGAGTCG
TTTTCGAACTAATTAATTCACTACGCCTATACAAATATATTGCTTTTCAATTTGATTTAA
ATTTTAGATAAAATTACAATTTAATGGTGTCGCAACACAGAGCTCAAACTCCGTACGTCG
CCGATCGCGATCCAGCAACGGTTTTATACGTACAAAACATTAACACTAAAAATCTTCGAA
ACCTACTGTCTATTGCACTATCCCGGCGATTCCAAAGTATATTTCATTAATTATATATTA
AAATATTCTACATAAATAAAAAAAATCTACAGCCCAATTATTGGTAACAACAAAACTGAC
TCGTTTTTAACGACGAGGTCAAAAGTAAAATTTTAAAAGTATTAACAAAGTCTGCGGAAA
TTCATCTCGTTGTCACAACGTGCCTCAATTTTGTACTAACGCTTCCCCATATTACCGCCT
CCCAGAATGAAACTTAATCAACAGAAAATAGAAGTTGGGTGTCTCAAGTCTTATCGTATT
TTTTGTATGGAAACTCTAGGAAAATTACCATCTTGTAAAGTTAGTAGGTTTCCATTTCGA
TGTAGGAACTCTTTCAGTTTTATTTCATGCAAATTATGTATAATTCTGAAACTATAGAAA
TAAGTATATCAAAATACGATAAAACTTCAAACCAATTGATAATTCACGTTGATTGCCCGA
GACAGACCTTGAAAGGAATATTATTTAGTTTTTGGTTCCATCAACAAACATTGGCCCAAT
CAACGTTAAAAAGTCCCAACCCGTTTAAAATAAAACAAATAACAATCATAGAATATTCGA
GAACGCACCAACGTTCCAGTCGACAATACCGAACGAAAAACAAAACAAACAAAGGAATTT
ATACTAACTACACAGGTACAGTTTTTGATATTTTTTTTCTAAAGAGCATCACGTGATAAT
ACCAAAGTCTAAAAGCCATTGAAATTGTCTTGTTTAAAAGACTAGTGTTGCACAATCAGA
TGCATTTTCCCGTAATGCTCTTTAAAAAAGTAAAGAAATCAAGAGAACTGTGTCTCAATA
TTAAATACCTAAACGCACGAACAAGTTAAGTGCGATTGGTCGCAATAATCGACGAACGAC
AAAGACAAACTGCTAGCCAATATCAGGATACATTCTGCTTATAATCAAACCATCTCACCA
AACTCGCTCTCGTAAACTACCAAATGAGGAATTTCAAAATACGGCCATATTTAATGTCGA
AAGCGAGTACATGATAAAATGGTAGTATTGTACTTGAATCTACGTTTTGCTTAAGATTAA
TAAGTAGTAAATAATGTAGCAATTGCGACGCGAAACAAGCGTCGCCATATTTTAAAACGT
CACGTTGTCATTCGCGAGTCACGTCCGTGATAATGTTGCAGGGTTCAAAAATTTCTACTA
AAATCGTAGTTCCATGGTATTGTCAGTTGAAAATGTTCGAAAAGGATACAGTATCGAAAA
TTAAAACATTAACTGCATTTTAACTCTGCAACGATCTTAATTAGTATTTAATTTTCGAAA
CCGAACCTTTTCGCAAATTTTCACCAATCGCAAACAAACTTTACGATTAGATGAAAAGTT
GGACATTACAAAACCCAATAATAAGTAAAACAAGACAGTTACATTGAGAAGCCACTCACA
AAATAATCGTAACTGTGTAATTTTCAGTTTCTGTAGCTTGCTAAATAAGTGTTGCCAAGT
TTTATAAATATTTAGCAAGTAGATTCTCATTGTAAAGTCGTGTGACGCGTTAGTTGTCGA
CAGTTGCAGTTAACCTGTAAGTAATGTAGGTAGACGCGGCTGTTTGTTGTCGTTTCGTTG
TTAACACCAGCGGAAGGGCACGGCGCGCGGTCGGTCGGCGCCTTCCTTCACCAGCGGCTT
GTGGAACTCGCGACCGGGACGAGAGTGGATCGTCGCCCAGCAGTGCTCGCAGTAATACTG
TAGACAAGTAACGTTGGCGCAAAAGAATGGCGCAAACTTAGAGCCGCACCTCGCGCCGGC
ACATTCATCACACATCTGGTCGTCTAGAACGTACGGCTTCACCTCAACGCGCTTGTCAAT
GTCGCCATGTTGGAGTTGCACAAAGCGCGCGGAAATGGCCGCTATGTAAGACTGTTGGTT
CGAGAAGGCAACTCGACCTGCGCCCTTAGGATACTTCAGTTCTGGATCAGTGTCTATTCC
AGCGTAACACACTCCACCGTACAGCCGGTCCATTATCATCGCTAGCTCAACAGCTTTAAG
CGGACGCGGCACTCCTCCAACAAAGACCGTCTTCCTGGGATCGAGAGGCATGCTCGCGTC
CAGCACAAAGTCCGCATCAGCCAGCCTCCAGGGTCGGATCTGGACCGGTTTGTCACGGAT
CGTGGGCGACGACACGCATAGATACAGCTTGTCCTCGTCCGTGATGCACGCCTCCATCAG
AGCCGCTACTGAACTCTCGTCTTGGAACAGTAAGAAGGCATATCCTTTGGGCGGAAAGTA
GCTTTTGCTCTCGGCCTTGTGCGGCCAGTCCACGACCAAAGGCCCGAAACGACGAAACGA
AGATGTGATCTCATCTTCATCTATATCCGGGGGTAGTCCACCGACGAACACTTTACGGCT
GAACCTCTCTCCGTGCTCGGAGCCAGCGGATACGGGCGACGACCGTGCTGGAGACCCCAG
AGCGCTTACACACATAGACAAACCAGCAGCACTGAGCCTGGTCACGACATCCTGCGTCTG
ATCACCGGCGACGGCTGGAGACCCCGCACCGGCTGCACCCGCGGCTTCCTCCACTCCCGG
GAAGAAGGGCGACTTGCTTTTCATATTATTATCGGATGTGTCAGCTCTCATTATGTCTGT
GAGGTAATGTTCTAATGAACGCATATTGTCCAAGCCTCCTCGGTCCTGAAATCCTTCGTC
GGGCTTCCCTGGGTAGGACACACTCCGCCTGTAGTCGGGCGGTCGAGGCGGGGCGGGCGC
TCTCCGCCACGGGGCGAAGGCCGAGGGCTGTGAGGGCGCCGGGGAAGGCCACCTGTACTG
CGGGGCTCGCCTGAACGGGGCACGGTACTGTCTCTCGTCGTCCGTGACGCTGGCAGC
(8157 bp)

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