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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR3382c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protocadherin-15_[Bombyx_mori]
Ontology
GO:0001750 C photoreceptor outer segment
GO:0001964 P startle response
GO:0002009 P morphogenesis of an epithelium
GO:0005509 F calcium ion binding
GO:0005737 C cytoplasm
GO:0005886 C plasma membrane
GO:0007015 P actin filament organization
GO:0007155 P cell adhesion
GO:0007156 P homophilic cell adhesion via plasma membrane adhesion molecules
GO:0007601 P visual perception
GO:0007605 P sensory perception of sound
GO:0007626 P locomotory behavior
GO:0007628 P adult walking behavior
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0032420 C stereocilium
GO:0032421 C stereocilium bundle
GO:0035058 P non-motile cilium assembly
GO:0035264 P multicellular organism growth
GO:0042491 P inner ear auditory receptor cell differentiation
GO:0048839 P inner ear development
GO:0050910 P detection of mechanical stimulus involved in sensory perception of sound
GO:0050973 P detection of mechanical stimulus involved in equilibrioception
GO:0051017 P actin filament bundle assembly
GO:0060013 P righting reflex
GO:0060088 P auditory receptor cell stereocilium organization
GO:0060122 P inner ear receptor cell stereocilium organization
Transcript
Level		FPKM:0.82 TPM:0.81
ORF EntryO_TrvaFAMAMG2537_complete:A_TrvaFAMAMG_TR3382c0_g1_i2
Sequence
(Nucleotide)
GTTGTCACGTAAAACTTTCGCCCGTATACCGACTTTACAGGCAACCAATATTTTTAACAA
ATTTTATTTCCTTCAAATTTATGCTCAATGCTTACCATTTAAGGTTCAAAATGTAATACT
ACAATAACACATGTCTATCAAATAGTGTTGCATTTTGAATTTTATCTGATAGGTGTTAGG
CGTAAAGTTGAATAGCACAAAGAAAAGTGTGATTTTATAGTTTAATTTTTAGCATCATGT
CGATTTTTAATACACTAAAATATTATTTGTTTGTAGTTGTATATCGCTTTCAACAGTTTT
ACTTTTTTTACCCAAATATAATTATTAAGCCATTTCAGAGAATATGCCAAATTGTTCTAT
ATCCTTATATAATTGTTTGGCAAGTATATTAAACACATTCAGTATATAAGATAATAAAAA
TACATACCACAGAAAATACTGTATTTAGTAAAATATTTTCATCGTATTCCTTAAAAACTT
AATTTATTATTTTTTACAAATATAAAAATATTTATACATTTTCTAATGCCACGTTTATTT
ACAAAATAATATTAATAAAATATTATGCACAATTTGTTCTCATAGAAAGGACTAGCCTTG
GCTAAAAGTACTAGAAATTCGTTTAAAATATCATAATATTTATTTGAAGCATTTTTCAGT
CAATATTATTTTCGTTGAACACATTACGACAATATCATTTAATTACTTAGTTTTATTTAA
AACGAAATCATAAAATATAATCTCAAGAGAACTAAGTACATCTAAAAATCAGGGTATAAA
ACAAGAAAGAATAAATAAAAAAATAAAAATACAACACATATAAAAGATAATATAAAATAA
AAAAATAAAAAGAGAATTATAAAGCAATACTTTAAGATTCCGTTTACACTAAAACCAGTC
TAATTGGACGGATTCATTTATTAGTTCGAAATGATCACTAACACTTCACTACAATCCAAA
ATGATCACTTTTCTACCATTCGACATTATCACTTCACTCCAGATGATCACTTTACTGAAA
GTCGAGATGATCACTTCACTGATTCGGAATGATCACTTCACTATAACTCTGTTGTTGTTT
CAACAGTTGACTGATCGTAAGGGTAGCCGGAGAAATTCCTCTTACCAAACGTCACATTAT
CGTTGTCGACGGCTTTTTGCATCCCAGGTATATCATCATAGGCCATGATGGGCTGCGTTT
TCTTCTTATGGTTATTCCCATTTATTTTTCTACCTAAAGTCGTCGCTAACAACCCCCCAC
CCACATTATTTACGCGAGGCAATGTACCGAGTGCGTTGTTCAATGCTTGCGTGTTCGGCA
TTCTTCGGTTGAGCGTCTGTGTGTTCCGCGCAATGGTAACGTTGTTAGCGATCGGGTCGT
AGTGGTTCAGTTTGTTCAGAGTACCGCCGTTTTCGTTGACGCTTGAAGCTCGAGCTGTTG
TTGCCGTTTCGGAGAGTGTTGGACTTCTTTCGCCATTATCTTTGGATAAATATTGAACAT
TATGAATATTGAAGGCGTGGTTATTCGGACTAAAATCCAGTTGTAAATCTGCATCATCTA
CCGCCATATTTAGGACCTGTGTCTCATATCTAGGAGCAGGATCATCTTCGCTCGATTCAT
ATCCTGAAGGTGGTCTCGGAGGAGGCACGCTCATGCTTAACGTTCCGTATTGTTGAATAG
CTTGCTCTTTGTGCTTCTTATATCTATTCCAAGAGGCGCAGATATAGATAGTGGCGGCCA
CGGCAGCTACTAAGACCACGGCGGCCAACCCGATCAAAGCCGCCGGGAGTGCGGTGGCGA
GCGGCGCGGCGGCCACGTGCGGCTTTTTGGGTAATTCTGCCGCAACCAGGGGCGCTCGGA
CTTCGCTCACTGGAGACTGAAGGCGAGATGATACTGCTTTGTGTACGCCATTTTCTATTG
CCTTCTGAACCGGCATAGATTCTCTCGTCAATATTTCTCCAGTGCTCGGATCTATCAAGT
ACAACCACACGTCAGTTCCTCGAGGATCGCTCTCCAAAGTCCCGTTTTCTCCCAAATAGT
GTCTCGCTGTCAACTTCTCTATTCCAGCTACTAAGCCACTCTTATCTTCTATAACTGATA
GAAGACTTCTGGCCCTACGTCTCATTGAATCAGGGTTTAAATCTGCTATCTCTAGTACAA
GTTGGTTCTCTTTTTGAAGGAGGTTAATCACAACAGAAGCCCTTGCTATATTATAGTCTT
GAGGCGAATCCGGATTATCTCTCGCGGTAACACTGAACTTGAACGGTAGTATATCTTTAG
GAACATTCTCGAACGACTTTATATTGCTAATGATGCCCGTGTCTGCGTCTAGACTGAAGT
ATTCCTCAGCCGCTTCGGTCCACGAGTTCTTGTGGTATTCTAACTTGCCGTAAGCACCGC
TGTCTCGGTCTTTTGCCTTAACTTGCAGAACATTAGTACCCAACAACATTTCCTTGTTAA
CTATAGCGAAGTACTTTCCCTTCGCCCCGGCTATAGTCGATTGCTCATTGAAAACAAACA
CAGGAGGATTGTCATTGGCATCCGTTAAATGTACTTTGACTAACGCTTTACTGTTATCCG
GGTTTATTAATCCTTGTATGGACTCTAGTTGGATTTCTAATGAATATTCTGATAGTGTTT
CGTAGTCTAATGAACTTGTGTTTAGGTAGATAGCGCAGTCGCGTTCTTCGGTCAGTTTTA
CGTAGAATATTCCTTTTTGCGATGATTCAGTTAATAAACATTTTAATGGCGTATCAGGTG
AATGTTCCCGCTTGTTGAGTAACGGTAACACTCGTACTAAAGTACCGTTCGGTGAATTCT
CTGCCACGTGTTCAGTATAAACAGTATCAGCGAAACCTAGGCCAACATCAGGTGGGACAG
TGGCTGAATGACTGACGTAAACAGTGAGACTGGTCACTGAAGACATCACTGGATCACCTT
GATCGTAAGCTTGGACGTCCACCGTATATTCGCTATCAGTCTCCTTCCTCAAATCATCTC
TAACCCTCAAAGCTCCACTATCAAGTTCTACATGGAAGTACTTGGAAGCTTTCCCTCTGC
CCACCAGTTTGTACCGAACTCTATTATTAGGAGCAGTGGCATCTCCATCACTCGCCACGA
CTGTCTGAACAAGACTGCCTATTGAAGAGGAATCTTCTACTGTGACTGGTCGAACTATTG
ATGTAAATATGGGAGCGTTGTCGTTTTTGTCATCAACAACAATCTCCACAGTAGTAGTAG
CACCAGGTCCTTCATCACTATTCTCCTCAGTACCAACGATGAGCTCGTGCCTTGCGCTCG
TTTCTCTGTCTAAAGCCTGCAGTGTTCTGATCAAACCGGACTTGCGGTCGATGGAAAATA
GTTCCATGTCCCCCCTCATTATAGTGTACGTTATTTCTGGGGATGTGTCTGGATCTTCTG
CCTGAACCTTAACAACAGGGTAATTAGGCACATTTTCTGGTACATGAACAGAGTACAGCG
GTAGAGGGAATATAGGCGCTTCATCAGGTATATCCTGCACTTGTACTGTGACCGACGCCG
TTCCTAACCGTTTGTCAACAGCGCCATCTGTCGCTGTTACTACGAAAGAATAGTCCTTCG
TTTGTTCATAATCAAGTTTCGTCTTAGTACTGATCAAGCCGGTGCTGTTATTGATATTGA
AGGGCAGATTGTGAGGGATGCTGTAGCTGATCTCCGCGTTGATTCCTTCATCTGCGTCCG
TTGCGTGCACGTAACCGACAAATTCTCCTGTTATACCTTCTTTGACTTGAAACATGTAAG
ATTCCTCTTCGAACTTCGGGTTATTATCGTTTATATCAGTCACTTTAATGTTAACTGTCG
CAGTGCTAACTAATTTCCCTGGATCTTCTGCTTTTACTTCCAGCTGATACCTAGTTAAGA
CTTCTCTATCTAAACTTCGTATAACCGTTATAATTCCAGTGTTAGATCCGATAGCAAACT
GCCTGAGATCATTGCCTGAAGCTATGCTGTATGTTACTAGTTCATTCTCTGGATCTTTAG
CAGTAACAGTTATAACAGTTGAATTGATAGCAGCGCCCTCTGAAACGGGAGCGTAATAAT
CTCTAGACGAGAACTGTGGTGGACTAGTATTGGGACCGGGAGCTACTGATATCTCGACTA
TCCCTTGAGAACTTAATCCTTTGGCGTCCATAGCTCGCACTGTTACGCTGTATTGTTCAC
CAGCTTGAAGACGACCTGTGCTTGATATAACTCCAGTGTTAGGATCTATAGTGAATTTGT
TGCCACCATTGTTAGAGACGTGATACAAACTGTACGAGACACGTGCGTTCTCACCCTCAT
CGATGTCTACCGCTTCCACCTTATGCACAACAGTAGGTTCCAAAGAAGCCGGTATAGTTA
TAGGTAGAGTTTTAGGTATCATCGGAGCGTTGTCGTTCTGGTCTAACAGTTTAACTGTGA
TCATGTATGGTGCTGAAGCTGCACCACCATTTGCTTCCCGAGCCACGATCTGAACCCTAT
ATTTGCCAGTATTAGGCGGATCTCTATCAAGAGTTTCATTGCTGACAACCAGGTAGCCAT
CGTTGTTGATATCGAAGAAGTTTGTAGTTAATTCAAACGTGTAGTTCGGTACTGGATCGC
CGGGTCCCAAATCTGGATCAGAAACAGTCAATCTAATAGGTTGTCCATTCAAATCCAAGA
CTCTGGTCCCTTTAGGCGAATTCTCTTCAACTTCTCCTGTATCTGATGATGCTTCTACAA
CCGGCGGGCTTGCGTCCACCGGTCTTACTGCGACGGTTAGTTTGGCTGTTGTAAACCGTT
TCGCTTCTGATAGTTCCTCTGCCTTAATAATCAGCTGGAATTTCTTCGCGATACTCGTAT
CGACAGGTTTCAGTTGCTTCACAGCGCCAGTATTAGCGTCTATTGCGAAATATTCAGCCC
AAGATTCAGGCTCTCCGCTTTCGATACTATATCGTATTCTGGCGTTCAAAGTATCCATAT
CGACTGCTTGGATTTTCTCTGGTTCTATTGTTAGGATTCCTGCTAGCATACCGCTGTTTA
CATAACTAGCGTACTCAGGATCAAAACAGGCACCTTCATGTAATGTGCATCCTTTGTAAA
TGAAAGACGGATCTTGGTCATCATCATCTTGCACGTTTACCGTCAAAGTCGTAGTACTTG
ATAGGCGTCTTTTGTTATCACGGGCACGATCAGAAGCGACAATAGTGACTAGATACTTCT
GCGTTCGTTCGTAATCCAAGCTCCTATTTACAATGACATGGCCAACATGTGGGACCGGTA
TCGCAAAATGACTGTAACCGTCTTCAGCCTTCATCGATTCCAGTGTGGTATTGTCTCCGC
GAATGATGAAGTATTCTGAGAGACCGTTTACACCAGCATCGATGTCCACGGCTCGGATGC
CTTCGAATATCGTGGTGCCTACTTGGGCCAGCTCAGGCACGTTAGTTTCATACGGCGTTC
CTTGAAAGACCGGTGCATTATCGTTGATATCAGATACTCTCACAATCACAGGTATAGTCC
GCCGCTTCTTCGTGGCTTTCACCTGACACACCAGCTGAAAAACCATATGCGACAAGTTAT
CAGCATCTCTGTCTAGTGGCTGGAGTAACTGTAGTCTCTTGCCATCAAGTTGAAACAGCG
TCGGTCCTTTGGGGAACACGGTCGATAATACCACATCGACATCTGGCTCTCCTACTACCG
GCAAGATCGCTGGTACCGTGCTTTGATTGACTTGTTCTCCTCTGCTTTCTTCGATATCGA
CTATAATACTGGATTGTCCTGTTTCCACCTCACACGGACCAGGAGTTGCTGTGACCAGAT
GTGCCAGACAAATGAGAAGCCATATCGATGTTTGTCCATGCCGGATCAGCGCACACCACC
GCGCCATCTCAGCTAGAATTATAATGCTTTTGAATTGGCATTCCTCAGATCATTGGTTTT
GCTGCATCTAAGCGTTTGTTAGTCGACCTCATAATCTCGTCGCCATCTCGATATCTATTT
AATCCGGATTGCGTCTACTCTGTCCCGCAGGAATGCGACACCTGTGACCACTGCACTAAA
CCACAGATCCTGGTTTGAAACTCTTTAGTACAAAAGAAACGTACGAGTCACGTAACTCAA
TAAAAAAAAGTCACAAACACAATTTTTTATTTGATACTTTTAACAAATAAGTTTTTCTGT
TAAAACGGAACGTATAAAGATTATTCTACGTCTAGCGGACAACAACACACCCACT
(6235 bp)

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