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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR3374c3_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protein_suppressor_of_white_apricot_[Bombyx_mori]
Ontology
GO:0000395 P mRNA 5'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0016607 C nuclear speck
Transcript
Level		FPKM:9.07 TPM:8.89
ORF EntryO_TrvaFAMAMG2511_complete:A_TrvaFAMAMG_TR3374c3_g1_i2
Sequence
(Nucleotide)
CATTAATCGATTGATTTTTCAATCAATTGCTTAATTTGTTTAATTTTAATCGAACTAACT
TAATCATGATTAAATTAATCGTGATTAAAATTGTAATCGTAATCGTGATTAAGTAAATAA
AAATAATCATTAATCAGATTAAATTTTTGCCAACACTGTTTACAACCTATAATTACTTAC
TCAGACAGCATGAAAAACTACAAGACTATCAATTTATCAACCTTAGTACAAGTTTCATAA
CTAATCTCGACTGGCAGATGTTTTAGAATCCTGTTCACTATCACTGGACCACTCCCCCTC
ACTATACTCTCTCTCTTTCTTTCTCTTTCTATTCACTTCCTCGTCAGAAGAGTTGTGTGT
GAAGCCGGTATCGTCCTCTATATTCTGCAATACTAAGTCTTTGGTCGGAGAATTAGTTCG
TAGTTCTTTGAGCGTTTGTGTTAGATCGATGTTGGGTAGTTGTGGTTCTTCTTCTTTCCT
TCTCCGTTTCTTGCTTTTAGTTGTGTGTTTCTTTTCCTTTTTTCTTTTCTTTCTTTTCGA
ACCATCATTATCAGAATCCTCGTCGTCAGATGACCTGTGCTTTCTTCTTTTACTTTTATG
ATGCGATCTTTCAATGTCATCTTCATAGTATTTATCTCTGTGTCTTCTCTTCTCTCTCCG
TCTTCTTTTCTCTTCTTCTTCTGCTTTCTTCCTCTTCAAAGATTCTAAAGTATCCACCAT
AGCACTAGCTAGTGAGGATGTAGGCAGCACATCAGCGCCGGGATCGACGCCCACTTTCTT
GAGGAACTCGGCGGCGCGACGACGACGATCCGTCTGCTTCACACGATCAGTCTCACACTC
ACCTTCCATTTTACTATCAGATTGTTCTCCAGTAAGATCAATCAAGTCATTGCTGCCATT
ATCTTCGACAGATATTATTTCGTTTTCAATATTTTCCTTCACTGGTTCACTCTTTTTATG
ATCTCTGTCTCTATTTCTTCGCTTTTCTCTAACTGGACTTCTCTCCCTACTTCTCCTTTT
TTCTCTACTTCGCGACTTTGATTTGTATTCTTTTTTTCTATCCCGTTTCTTCTCTTTTTT
ACGTTCTGTATTATCTTCAGTCTTCTGTATGTCTTCTTTTGAAGTCTCTATTATGTCTGT
GACTAATTTTGGTTTTTCTATAAAGCGTGGTTCTATTGGTATTGCTTTTATTTCGTGTAT
TATTGGCATCGGTTTTATAGTAGCCACTTGCACGGGTTTGGTTTGTTCTATAGTTCTAAC
TGTGGGAAAATCGTGGACTAATCCATCCATTTTGTACACAACTATTGGTGGCAAAACGTT
TGTTGTATTTGGCTGAATTTTTGGACTTTCTTTTGTTTCGATTTGTTCAGGATTTTCAGT
TTGTTTTTCTTCACCATTTTCGTCGTCAGAACTAGATTCGTAAGGTAACGCTGGCTTCGG
TAATATGGGATCAGGTTCCTTCAGTTTCTTTATAGAAAACGATACAGGTAAGGAACTCTT
CTTTTCCTTTCTTTTACCGTTCATGTCGATTCCTTTCTTTTGTTGTAGTAATCTTTTATA
AAAGGGATGGTATTTATGATCGGGATCTAGAAATGTAAATCTGGGATCGTTTTTAGAACG
CACAATGTCAGCGAATTCGTCACCATTTCGTGCGACATAGGCGGCCATCTTGTCGATCAC
AGTTTGAACGTCTTCTGGTGGTGTCAATATAGGTTTATCTTTGCTATCTGTTGATGAAGT
GTCGTCCGAATCAGAATCGTCAGAACCAGTATCTGAGTTATAATTCTTCATGAGACTAAG
TCCAGTTGATTTAGTGACTTTAGCTTCTGTTGCCTTCTCAGCTTGAGCTTGTGCCTCCGC
CTGCGCCTGAGCCTGCGCCATGTACTGGTGGTAGTAAGCCGCGTACTGCTGGTAGTATGT
CGATTGAGCCGCTTGTATACTTGGATCTGGAGCCCCTTGCGTATACATAACGGGTTCCTT
AGCGATGTGCGGGTGCGGCGCAGTTGGTTCTGTCCCGGGCGGCGGGTCCTCGCCGGGACA
CGCGTCCGTGGGACCGCCCACTAGTCGCGACACCAGGAGTGTGTAATCGCAGTCCGCTGA
CGGCTTGTATTGGATGCTCGGGATCGATGGTGCAGATTCAATGATAGTTGATGCCAAGCT
TGGATGTAGATACTCTTCATTCTCTTGTGGTTTTTCTTCAACTAATTCTGTCTTTTTCTC
GGGCCATTTTCCTGCTTTAACAAGTGCAATGAGAGCAGTGTAATAAGGGTGTAGTGGAGA
GTCTTTATTGAGGAACTGAAACTGTGGATTGTCCCCTTGTTTGGCCTTTATCAGGATTTC
CATCTGAGCTCCTTGACTTGCGATGAAGTTCGCCGTTTTCTCTATAATAGCATTCTGCTT
CTGCGTTTCTGGTAAAACAGTATCGTCTGGTAGCAGTGTTACAAGACTAGATGGCGGTAT
AAATGGTTCATCAACTTCCACTGGCTTCACAGGTGGTTTCGGAGGAGCCAGTGTTTCATA
GTTGAAGCCCACTTGACCATAGCCCGCAGCATGTAGCCGCTTCAATTCTTCCTCTTTGTA
CATCTCTTCTTCATCTTCGTCAGTGTGAAGAGCTCGGTAACGTTCATCATCGCACAGTTG
TTCCACGTCAAGCTCAGTCTTAGTCAGCTCCACTCGCCAGTCGTAACCACCGGAGGGGGC
TTCCAATGCTGACAAATCATGTAGGGCACCTCGAGCATCATACCTGTTCACACAAAAGTT
ATGATAATTTTTGAACTGTCTTATTGGGACCTCAATCAATCAGTATAATATGGCATTTTT
ATCAAGTTTTTTGGTTATGTTGAATGAATTTGTTTTGTTTATGGCTGATTCTACAATAAG
AGGTTTCAAGATGTATGGAGAGGTGTCCAAGGAGAAAAGTTAAGAGTTTTTTATTGAAAC
TTTTATTCAAACTGGAAAGGGGATAGGCTAGGGGAGAGACTTTTTGGGCCTTTGGAAGGC
ATTTCAGAAAAATGATTTCTAATTAGGCATTCAATCATGAGTATATCTAATAAAGTATGT
TTTGATGATGTGATTGACTGTAAGATAAACTACATATAGAACAAAAAACTGTTAATAAAC
AGATGGCGGCACAAGTTACCTCTTATCATAGAATCACCCTTATAAAAAATGTGTAGAATA
AATCTGGAGTTCTTGAAATGGATATTTTTTTATTGCTGTAGGTATATGTGTACAATTTTA
ATACTAATTGTAAAATTTTGGTTTGTATTTGTACCACTTGTTCACAATAATATTCACGGA
ATATAGTACCACAAAATCATTCGCATGTGAAACAGAAAAACAACAGCTTTATACATACTC
AATTATTCCGTTGCAATTTATACATACCGCTGAAGAATGTCACCATAACATTAGATGTCG
CTGCGACGATCCCGAGCCCTCGACTCCGTCCCATCCCGGCGCAAACTTCACACATCATCC
TCTGCGAAAATCTTATAATTCTTCCAAAATTTTATTAAACTCTGACAAATTATTATCGTT
GTTTATGGTTTTAGCACCACAATTAGCAGTCTGATAGTAAAAAACGGATCGAACCTGTCG
ATTTTCAACGTTTCATCCCCCATCCACGGAATGAGGTGTTTTCCTTGGTCAATGAACAAG
GCTCTGTCATCGTCCTTGAAGAGTTTGCATGAGTAGCCGAACACGAATAACTCTTCCTTT
TTTTTCTTTGATTTCATTCTTTCTTAGTATACCGACTTCACTGTGACGTCTAGTCCATTT
TGACGACATTTTTACTGTGATTCAACTTGAAATCACTTGAAATAAACAAGTTATTTACAA
ATCACAAATTCACTGAAATCACAGAAATCCACATTCGCATTTTTATTGACAAATGACTTT
ACGGACAAGAACGACATATTGTCAAGTGAAG
(3931 bp)

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