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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR3159c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_KGM_17243_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000178 C exosome (RNase complex)
GO:0000398 P mRNA splicing, via spliceosome
GO:0000460 P maturation of 5.8S rRNA
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003724 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005730 C nucleolus
GO:0006364 P rRNA processing
GO:0006397 P mRNA processing
GO:0006401 P RNA catabolic process
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:1.16 TPM:1.14
ORF EntryO_TrvaFAMAMG2077_complete:A_TrvaFAMAMG_TR3159c0_g2_i1
Sequence
(Nucleotide)
TTTTTTTTTTAATAATATGTATAAGTATAATTTCGAAAGTATTTCTTAAACTACATATAG
AGACTGGCCGCGAAAACAATGTCTCTCTTGAGCATTTTGATCGCGTCACTGAATTTATTC
TCCAAGTCTGTGTTACCAATGTTCTTGGCAGCCTGACACAACTGTCTCATTACCTCTTCA
AGTCGTCTCATACATCTTATTATTGATCCTTCAAATACGTCAGTCATTTTGCAGATCTGC
AAGAAGGAAGCTCCTTTGGCCCAGGATAGAACCACGTCCATTAGTGTACATTTAAATTTA
CTAACGTAGTCATCTTCGTCTAAATCCATTTTAGAGTCAATCGATACTTTCGCTATTCGT
CGGGCGTAATCCTGTAATTGTCTGAGCACGCCCCGCAGTTCCTCCCCGGAGACGCTGGCC
TGCGTGGAGTTCTCGTCGCACACGAAACAACTGATAAGCGCGGCGCTTTGTTCAGGCGTT
AACGAGTTGAACACTCCGTTGAATATTAACTCCGTTAGTAGTAGTTCATCGGCACTGCTT
AGTTCACAAGCTATCCGCCCCTTCATTTCGATAACATCAGCCGCGGTACAGTACCCGAGT
CGTCTCAACACTCGTTTCCGTTTCTTGAGCTCGTCCATCTGAAGTATGCTCTTAGCCGTT
TTCAGTTCAGCTTTAGCTTTCTGTAGCTCTTCATAGTAATCCTGTTTCTTATCGTAAGCA
GCGGTTAAAGCGCTTTTATTTTTGTCTTTATGAATGGGATGTGAATATAACCTTTCTTCT
AACAGTTTGATCCTGTCAACGCACTGTTTGAAAACGTCATCATTGATTTTCATGTCTTTT
ATGGGGTTCAATAGGGGAGGTCCGTTCGGGAATCGTTTCTTAACTTCGCCTATAGTCTTC
AATACTGACTTCCGGTTATCAGCCGGCCTCAGGTCTTTAGGATAGTACACACGGAGGGAA
CTGATCTGGTAGATGAGTGTGTGTATAACTGGGACTACTTGAACGTCGCCAGACTCTCCA
GGCGGACAAGGTACGTTAGTTTCACTGTCAGAGCCAGTATTGGTCTTGACATGCAACAGA
ATGTCGACAATGATCACTGGTTCAGCTGTCAAAGGATTCTCTTCGCCTCTCTTGCCTTTG
TTTGATTTATGTCGAAAGTTTACTATGATACCCCAGTCGTATTCATATTTTTCTGTTTTA
ACTTTTACAAGCCTCCCTGGTTGCAAGAAAGGCTTCAAATACTCCGGTTTAGTGATGAAA
GATCTGAACTGGTCACCAAGTAGATCTAACTGTGATCTGATAGTGCAATATGAAGCTACT
GAGTTTTCTTCGTCAATTGTCAAAGCGTCATACTCTTTCTGTTTCGTTTTAACCTTTTCT
ATAAGATCTGGTATCGCCGCTTGATTTTGAAACTGGAAGAAACTTCTCTCAAGCATGTAT
TCTGGGTTAATTTCTTCAACACGCAGTAGATTTAAAACCATGTTATAAGTAAGGTGGAAA
GCTGAATTGATAGGATCTGCCTTTCCTTGAACCATTCCCTTGACAACAGTAGGTGTGACT
TTCTCGTCGATCATTAATATAACTATTCCCTTGTCGTCGAGACCACGCCGCCCCGCACGA
CCTGACATCTGGATATATTCACCTGATGACAAAAATCTCACTTCCTTTCCGTCGAATTTT
TGACAGTTTGTGAACACTACAGTCCTGGCGGGCATGTTTAATCCCATAGCAAATGTTTCA
GTTGCAAATAGTGCCTTAATAAGTCCAAGGCCAAATAATATTTCGATAGTTTCTTTCAAT
ATAGGCAGTAGGCCTCCGTGATGGATGCCAATGCCTCGTCGCAGTAGCGGTATAACGTTT
TCAACTTGCGGCAGTTTTCTATCCTCCTCGCTCAAAACATCCATTGCATTGCTAAAAACT
TCATCTACTAGTTTCTTTTCTTCAATTGTATTAAAGTCCAACTTGGCCATTTGCAAAGCG
TAAAGCTCACAGTCTTTTTTACTAAAACTGAATATGATCACAGGAGCAAAGTTCCGTTCC
ATGATCATTTTGACAATATTGAATATGTTTGTCTGGTTTTTGTCTCGAGGTCCACCGCGT
CTACCTCGCTGATCACCTTTGGCTGCTTCACCGGCATTATTTAACACTGTCATTGCAGTG
TTAAAATTGTCCTCTTTAAATATACCCTTTTCATCAACAACCAAATGTATCCCATCTCCC
CCGGCTGGGAATATGTAGTGCTGCAGTGGTGTAGGTCGGTACTCAGTGTAGATCACGTGA
CACGGCTGAGAGTGTAGACGACAGACCCACTCGGCAAACTGACGAGCATTCGGTATGGTG
GCTGACAAGAATACGTAATGTACGTTGTCCGGAAGAAGAATTAGAGTTTCTTCCCAAACA
ACACCTCTCTCCTTGTCTCTCATGTAATGTATCTCATCGAACACAACCCAACCAACTTCC
CTCATTATTTCTGAACCTCGATACAACATGTTTCTGAGAATCTCAGTAGTCATGATAAGA
CATGAAGCTGATGGATTGATAGTGACATCACCGGTAATGAGACCAACATCATGAAACTCT
TCTGAGAACTCCCTGTACTTCTGGTTGGACAGCGCTTTAATAGGGGTTGTGTATATTACT
CTTTGTTTGTTTTTTAATGATAATGCTATTGCATACTCAGCAACAACTGTTTTACCAGCA
GAAGTGTGGGCAGAGACAAGTACTGATTGTAGATTGTCTATGCACAGTATTGCTTCTTTC
TGGAAAGGATCTAATATGAAACTGTATTGCTTTGCTGGCTCCGAGGTGAGTGGCACGAGA
GGTGCATATTCCTGATTCGGAGGTATTGCCACTTCATGTGTACATCCTTCATGAGTTTCT
AATGTGTGTATAACTATCCGAGATTGCAGTAAGTCCACATTTATATCATTAATTAAATCG
GTTTCTTCTTCCTCTTCCCGGGGCTTTTTTTGCCACAGTCGTGTCTGCGTACTCAACATC
ATCATGTGCACGCTTGTTAGCTGTAGCCGTTAACTCTTCAGGTGTTTCTAATTTTTCATC
TTTCTTCACGTTTGGTAGCTGAATGGCAGATTCAGTTATTGGTGTATCATCAAAGCAGTC
AAATAAACTATTGATATCAGACATTATACTTGAATTTCACACTTATTTGCAACAAAAACA
ATTAAAAACGCTATCTGCCATTGACGTAAATACACATGGATTTTTTTTTTTTTTTTGTTG
CAAAGTAGATAAACGAGCATACGGCCCACCTGATGGTAAGCGGTCACCGTCGCTCATG
(3298 bp)

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