SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR3016c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_RFWD3-like_[Amyelois_transitella]
Ontology
GO:0002039 F p53 binding
GO:0002230 P positive regulation of defense response to virus by host
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005737 C cytoplasm
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0008270 F zinc ion binding
GO:0010212 P response to ionizing radiation
GO:0016567 P protein ubiquitination
GO:0016605 C PML body
GO:0016874 F ligase activity
GO:0031571 P mitotic G1 DNA damage checkpoint signaling
GO:0035861 C site of double-strand break
GO:0046872 F metal ion binding
GO:0097371 F MDM2/MDM4 family protein binding
GO:0098779 P positive regulation of mitophagy in response to mitochondrial depolarization
GO:0098792 P xenophagy
GO:2000001 P regulation of DNA damage checkpoint
Transcript
Level		FPKM:6.87 TPM:6.73
ORF EntryO_TrvaFAMAMG1990_complete:A_TrvaFAMAMG_TR3016c0_g1_i1
Sequence
(Nucleotide)
TTTTTTTAGAAAAAGCCGTTCCTTCTGGTTCCTTCATAAAATTGTAGTAGAAAGCAAATA
ATTGTTTATAATTTAACGTTGAATACAAGTAAATATATTCCAGAATATGAATAAATGTAA
TGTAATGTTGAATTATTTTAAAATATCAAAAAAGTAGTAGTGTATTTTTATTAAAAGTAG
AAAAAAAAAAAATCCATTTTACACCGAAAGTTGTTAAGTTGTTCGTTTGAACGAGCTGGT
GTGATTAGTCGAATCAACGACACATAAACAGTAACCCAATGAATACCGAAAATGAGCCAG
TCCCCTGCCACTCAAAGTCAAAGCACAGAACCGCCCGGAAGTCCCAACATATTCGAAGAG
CCAGAACAACGATTTGCAGCAGAAAATGACAATCAGATTGACCTCCCGTCGACAAGTCGA
AGCAGCGATCAGAACTATGAGGCTCCCTTGGACGTGCCGAGCGATGCGCCCATACAGATC
GATCTACCGGGCCCCATGAGATACCTCAACGATGACAGCAACGACACGGTCCTCAACATC
ATCATCAACGGGCCGGGACACCTGCCGCCGGCCAACGAGGACAGCAACCTGACCTCCTTC
AGCGACGAGAGCACCCGCCACTCTATCACAGACGACTCTAACTGCTGCACCTCCACCAGG
CTCACGTCCAGGCTCGACGACGACAGTGGACCGCCCGCCAAGGTGCGGAAAATGAACGAA
CTCGAGGATGTGGACGGTGAAACTTGTCCGATATGCTTAGACTCATGGGGCAACTCGGGA
GACCACCGACTGGTAGCTCTGCGCTGCGGGCATCTGTTCGGCGCTGAATGTGTCAAGCGC
TGGCTGAAGGCGCAGAAACTCAAAGACAGATCGTGTCCGACTTGCAAAGGCAAAGCTAAT
TTGAAAGATTTGCGGTTCATATACGCGAGGCGTTTAGTAGCTGCGGACACTTCTCAAATT
ACTGCTTTGGAGAAACAAGTCGAGATACTTCAGTCGGAAAAAAGTCGAACTGAACTAGAG
CTGGAGAAAATGAAAATAGCTCATCGCGCCTGCGTGCAACAACTTGAAGGCCTGCGTAGT
ACTCTTATGAAGTCACAATCAAGCAAGGAACAACCCTCACGGAAATCATGGAGGTTTGCT
CTCGAGAAAAATCTTGAGATCTGCAAGGATGGGGGGTGCAGAGTATTGACGTACAACTGT
CGAACTTACGAATTATATGTGTCTCAAAAAAGTGGCAACTACCTGTTCCCTGGGTTTGGA
ATCCGTAAAATCAGCTGCGTCGATTACAAGCTGGGACAATTTGTTTACTTACATCCGAAA
CCGATCCGCGACATCACGTACTCGCAGCACAGAGACTTGCTGCTGAGCGTCGGGCTCGAC
AGCACGGCGCGGATAGTCGAGCGCGGCATCCTCAGCGTCACCGTCAAATCGGGGATGCCG
CTCTGGTCGTGCTCCTGGGACAACCTGCGCACCAACGAGTTCTACGTGGGCGGCGTCGGC
GGCGTCATTCACCACTACGACGTGAGGAACCCCGGCACTTACCTGAGGATGTTGAATTCA
CCGGGGGACCTGTCGCCTGTGGTGTCCCTGTGCTCCACTGAATTCGGTTTGCTATCGTGC
CAGCTGAACTCGTCCAAGCTGTGGATGGTGAACACGAGGCAGTGGGAGCCGAGGACCTTG
CCGGTGGAGGGCTCCTTCATGTCCTTGGCCTACGATAACTCGTCTCAGAGAGCCGTCGTA
GCATCCAGACCGAGCTCGAACGGCTCGGAAAGATCTAAACTGAACGTGTGCAGACTGAAG
CCCAGCATTCCGAACGGTGAGGTGATCTGCGACGTGGTGGAGACGTTCTCGGGGTCGCTG
CGCTCGTCGCTGATGTCGAAGGTGGCGTGGGTGCGCATCGCGAGCTCGGCCTGGGTGGCG
GCGCACTCGGAGAGCGACAGCGCGCTGTACCTGCACGGCGTGGACGGCGCGCGCACCGTG
GCGCTGCCCGCCGCCGAGCCCGCGCTCGACGTGTGCGCGCTCGACTCGCACTCCAACCAC
CTCCTCGCCGCGCTCTCAGACTCCCGTCTGCGCCTCTACAAGGCCGTGCCCACCAATACG
TAACCGCCGTCTTGCATTCCATTCAAGATGCTTTAGTAACTAGAAAAAATAATTTAAAAA
AAGGTAAAAAGAAGAAGCAAATTCTGTAAAGAAACAGCTCATACAAGACATACAGTATTA
AACTATGCGAAGGGTTTTAGAAATCATCGTCGTCGGCGGCATGTTTTGTGTTATAAAGGC
GTTTATCCTCATCTCAAGGCTGGTAAAAAATGCCAAATGAACTATTCTTAAAAATCAAAT
CATTCTAAATATTGTAGTATGTAATGAAATAGTTGATGGTTGTATGTAGGAGGCAGCTTC
CCTATGTGCCCGGCGTTGCTGTTGTCCGTCCGTCCGTGTGTCCAGGACGGTACTATGTAA
ATAATATGATGCACAAGGAACCTGATTTGTTTGTTTGTGATTTTTGAATTTGTTCGATTT
TATAATATAATTTAAATGTATTTGATTTTGTAAATATTGTGTTAAATAAATGACTTGATT
TAGAAAAAAA
(2590 bp)

- SilkBase 1999-2023 -