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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR2995c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_protein_CASC3_isoform_X2_[Bombyx_mori]
Ontology
GO:0000184 P nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0006417 P regulation of translation
GO:0006810 P transport
GO:0008380 P RNA splicing
GO:0016070 P RNA metabolic process
GO:0016607 C nuclear speck
GO:0035145 C exon-exon junction complex
GO:0048471 C perinuclear region of cytoplasm
GO:0051028 P mRNA transport
Transcript
Level		FPKM:6.96 TPM:6.82
ORF EntryO_TrvaFAMAMG1899_complete:A_TrvaFAMAMG_TR2995c0_g1_i1
Sequence
(Nucleotide)
TGTCCAAAGTTACAGATCCACCCTGTATACGACATCTGAAATCTACTACAGCGGGCTTCG
GCCAGACCGGGCATACACTACCTCCCCGCAACGAGATCTCCCGACGGCCATAAGTCTACT
GTACCCACATACACTTCATTTATTTATTAAAATTTAGGACATTTGATCAATAAACAAAGA
ATACACCATAAATTTCTAGATTTATTATTGCTTAATTTATTCTTTATGTCTATGATAAGT
TAAAATTTATTACAAGAGCATCGGTACTGCATGGTTTTATACTTTTAAACAATTAATTTA
CAATCATATCTCATTAAAATAGAAATTAACACTTGAGATCCAAAATAGCAAAAAAAAAAT
CGATTTTCAAACCACACAGTACACCACTACATATCGATATCGACTCACGGGAAGTGGTCC
CATCCCTAGCCGGGTCAGGCTTCGCTCGTTTCCGGTTGTTTCTCCTCTTTAGTCTCTGAC
GGTTTCGAGTCTATGGATATGGAGCTTGACGTCAAACTGTTTGGTTGAGACGACTCTTTG
CTTGTTGGCTCTTGTGAACTACGAGTTTCAGATTTTTCTTTATCAAGCCACGGTTTTCTA
TTGAACATATTCTCGACTATACGATCTATGTTTTCCAATTCCGTCGAATTTGCCGTTCGT
TCGTTAGCCTGCGGTTTGACGATGGGTATGGCGGCGGTGGGTCGTCGCTGCGCGCGAGGC
GGAGGCGGCTGCGGCTCTTGTTCCGCGCAGTTGTAGTACGTCACGCCGCCTGTCTGCGTC
GCATAGTTATGATGCGGATATATCGGGTAGGCGGGCGTCGTTCCTTGCGGGTACATACCG
GCCGGGTACACTGGAGCGGTTCCGCTTTGCTGCATGTATTGTGCGGGCATCATGGCGGGC
GGTGCGTATCCTTGCGCGGGCGGGATTTGATTAATAGTGTGTTGTTGCGGCTGTATATTG
TGTATGGTGTGGTGCGGATGTGACACTACTTGCTGCTGATCTATCACGCCGAGACGGACC
TGCTGTTGTGGCAGGGGAGGGGCCTGGTGGGGCGGGGAGGGGGCGTGTGACGTCACAGGA
GGACTGCGATGTACCTGATGGATCAAATGTTGTGGATGTTGGTGTGTCGTCGAGTTGGCC
TGGTGTTGCGTAGCGGTTGGCGCATTTGGGAATTCATTTTGACCTGTAGGTACATATCTA
TGCGGCTGGTTCTGCGTAGTGGGGGGCCCGCTGGGGGGCTGGGGGCCCGGGGCCTGAGTT
TGAGGAGTGTAGGACTCCTGCAGGGGCCTCTGTCGTAGGCTACTGTAACGTTTGCTGCCT
CCACGAGATTCAGTAGCTGCAGTCTGTTGTTGATGTGAATTCTGATTGTTCTGTTTTTGT
TGTGCGTTCTGAACGGGCGGTGATTTATTAGGAACAGGATTAGGTTGTTGCTGGTTCTGT
ACAGGATGAGGTTTCTTCTTGGTGATGTCCGTGGGCACTGGCCGTTGTTGAGCGACCATT
CCGCTCACTTTACGCTGAGATTGACCTTGACTATTATTATTATTATTAACCGGTAGAGTG
ATTGTCAAATTTTTCATCGCCGGTAACAATTTATCTTGCGGTTTTTCGTTCTTAGGGGGC
GTAGTTTTGTTAAAGGCCGGTTTGGCGATAGGTTTCGGCTTCGGAGTTTTAATTGAGGCG
TTTCTGCGCAGTTGAGTGTTGCGTTCCGATGGCTCGTTCTCGGATGGTTGAGATTTAGAA
CGGGGGCGTTGTACGCGGGGCTTCCTTCCAGGTCTTTTAGCGCTGGCTTCAAGTTCGGGG
AAGTCCTCAGGATTGGGTGGTTTCTTTAGCGGCAAAGCGTTCTGTCTTCGATAAGCCTCC
TCATCTTCCCAAGTACGAGTGTACTTGTTCGGTCCGCGACCATATCGTCTGTTTCGTCTC
GCGTGAGGAGGCGCGTCCTCATTACGTATATCGTAACCGTATATAGCGACCAGCTCGTCA
CGAGATTTCGGCGCCTGTTCGTTCTCGTTGTATTTATCATGAGTCCATTTGTTGACGATG
TCCGATTTCCGCGGCGGGCGACGTCGCTCCGAGGCGGTTTCGGATCCCTCTTTCTTCTCA
GAAGTAGCCTCCGATGTCGCTTTCACAGTTTCCTCGCCGCTTGCAGCAGTACGGTCATCG
TGTTCGTAGAACGTTCCTCTCTTTGGAATGTACTGAGGATTACTACGGTCTTCATCATCA
TCGACTCGGCGTTCACCTTCCTGTCCTTCCGGATCAGCTTCCGAATGTTCAGAGTCGCTG
CCCGCCGAATCATACTCAGATTCCGGCTGCCCGTCGTTCAACGAGTTGCTGTGCTCGATG
TCCTGGGAACCCTCGGAATATTCCCCCGAATCATCGTGCTCTCTTCTTCGTATCACGGAC
GTCATTTTGGCGTCCTCTCTTGTAACCTGTATAACTTCCAGATTGGCGGTTTAGTGTTAC
ACAAACAGATAATATGCGGCGAACGCTCACAATTCACGTTACACAGCGAAAGTTAATTCC
CCACTCTCAATAAATGCAATAAAATGAACGAAACAAAAGAAGAATGTCAAAACAAGCAGA
CATAGCGG
(2588 bp)

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