SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR2947c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		putative_splicing_factor_pTSR1_[Danaus_plexippus]
Ontology
GO:0003729 F mRNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005685 C U1 snRNP
GO:0006376 P mRNA splice site selection
GO:0042802 F identical protein binding
GO:0045843 P negative regulation of striated muscle tissue development
GO:0050733 F RS domain binding
GO:0071004 C U2-type prespliceosome
Transcript
Level		FPKM:6.95 TPM:6.81
ORF EntryO_TrvaFAMAMG1738_complete:A_TrvaFAMAMG_TR2947c0_g1_i2
Sequence
(Nucleotide)
AAGAGGGAAGAACCAGCCTCTCTTATCCTCCAGCAGTTGTTTCAAGGGTGGAGTTGTATC
AAAGCAATTTTAATGCAACATTACTTGCTGAAATTACGGGGAAATTTTTATTCTAAACGT
TGGCTACTCATCCTAACGCCATTTTGATTTCGTCAAAATATGGAAATCGGTTCACGTAGC
TACTACGGTTTTCTTGGTTGGCTTTAGATATTCTTTAAGAAAACACTGAACTTTCGACGA
GAATTCCGAAGAGATATAAAACTTCCAGGAGTAAAGATACGGATTAAGCCACATAATGTC
GGCACACGAGCAAATGAGAGCTATGCTGGACCAACTCATGGGCACAGCTCGAAATGGTGA
AAGTGACAGACATGGAGTAAAATTTTATGATGACTCGGTTTGCAAATCATTTTTGTTGCA
ATGTTGTCCACATGAAATACTTTCGTCCACTAAAATGCCCAACACTAGTCTTTATCTCAT
CACAATACTTAACAGATGAGGGATAGATTGTATGAGTTAGGCTGTTCTGTAAGTACCCAG
ATGTACGTATAAAACATTTATAGTTAGCTGAATGTAATCTTTCTGCTAAGCAGGATTTTT
ATTAAATATGGTCCTTGTCATATTAAATTGTTTACTAATGCTGCATTGGTGAGTACATAT
AAAATTTTAGGAACAACAAAATACTTAGCCTGGTGTGAAATATTTGGTGACATACAATAT
CTACGTTGGGTATGTACTCTGCTGTTTAAAAGTGTAGGGGTACAAAACTATTTGCATGTG
TAAAACAATCAATACATTTTAAACATATTATCATTAAAATAAACAAAACAATTTCAAAAT
GTTAAAATAGAAAATAAAAATTTTATAAAATGATTTTGTCCAAATATGTAAAGTGACAAT
CATAACTATTTTGAATACTATTATAGATTTACACTTTCAGTTCTTTATGAATTATAGTGC
TTGATTGTCACATCCATTTTGTTTTATGGCTTCAATTCACTCTTCATATCAAATAGTTAT
TGTAAGATATTCAGGCAGGTGTTTCCGCTGTTTTGTAAGTATTTGAAAAATTATTATCGA
ACGAGGAAGTAACCAGCTCAGTGTGCATTTGTTGGTGTTATTGTATGTATTTTATATTCT
ACTTTTACTTTGAAAATATTATATAAGTGTTTATAAAATATGCTCTTATATGTACTATCC
TACTCTGATTAATAAGGGGTCTTCTGAATTATGGAGGCAAAATCTCATGGGACTACACAT
GCCAGACCCAGATTTATTAATGGAAGTGAACAGTTACTTTTCATGTGCTTTTAATTCTTT
CTTTTGCAGCGTATGGATTTAGGTGAGTGTCCCAAAATACATGATCTGGCACTACGGGCG
GACTATGAGATTGCTACCAAGACCAAAGATTATTTCTATGATATTGATGTAAGTATCAAC
CATTCTTGATGAGTTTTAAATGTTAAGAATAGTAATGATCTGTGATGATTAATTCACTGT
CTTAAAAATTCCAGTCCCATATGTTTTTCACATGAAAACGACTGCAGAACAAAGCTGTAA
GAATTTATTATTAATCTATAGGTTTTAACCCAGTTCCTAAACAAATTATTTTCCTTTAGG
CTACAGAACACTTACAGGCATTTATAGCAGATTGTGATCGTCGCACTACAGCTGCTAAAC
AACGCTTAGCTGAAACTCAAGAGGAACTATCTGCTGAAGTAACTGAAAAAGCAAATGCTG
TTCATGAATTGGCTGAGCAAATAGGACAGAAACTGGCCAGAGCTGAAGCGCTCGGTGAGG
AAGGAATGGTGGAAGAAAGTGTGAAATTAATGGGAGAGATTGACGAGCTTCGTAAGAAGA
AGGCTATAGCTGAGCAAGATTATCGTAATTCCATGCCTGCTTCATCATATCAACAACAAA
AGTTACGTGTCTGTGAAGTCTGTTCAGCTTACCTTGGTATTCATGATAACGACAGACGGT
TGGCTGACCACTTTGGAGGAAAACTGCATCTCGGTTTTATAACCATTCGTGAAAAATTGT
CTGAGTTAAAGAAAACCGTAGACAGGAGACGTGAAGAGCGCGGCGCTTCGGAACGGGAGC
GCGGAGGAAGCCGGCGACACTACGTCGGAGGCAGGGAGCTCGACCGACGCGCTCGGAGAC
ATCGCGAGACCGCGCGAGACAGGGACGGCAGACACAAGGATGATCGCGAACGAGGCGATA
AGGATCGGGAACGGGGAGACAAGGAACGCGATAGAGGAGATAAGGAACGCGACAGGGGAG
ATAAGGAACGTGAGCGTGGTGACAAGGATCGTGATCGGGAACGTGAACGAGAGAAGAAGC
GTAGTCGATCACGCAGTCGAAGTAAACACGATAATTCCCGGGAGAGATCACGCGGTCACG
ACGGGCGCGAGGCTCGCGAGTCGCGTCGCAGTCGCTCGCATCGCTCCTCGTCGCGGGACC
ATCGCCGCGAATAAACCTTACATATCTTATAACTCGTCGCTAACAATTCTGAAGGTATCT
AAGAAAGTCTGTTTTTTAAGTTGCAAAACGGTGTGCGTGTCAGAATACGCAAGTTGTGAC
GTCATAATACGTACGATTCTCACATCTTAAACTTAAATTATCTTTTATTACTGTTTTATG
AATTGTATTACAAATGATGAAATGGACTGAATATATTATACAATGTTTTTTGTTAGTATA
AATAAAACCTTAACAAGTTATTGTAACAATTAGTTTTATTAAATTAAATATATCACAATA
CCAAAATAAAGTGCCTTCGGAATTGATCCTGTCGAGTGATTGACAAAAAAATTGTGATGA
ATATTTCAATAACATTTACGAAAATGTATTGTTAAGCATGTTGTTGTCTCGGCGGTTAAA
TAAAACAAAGCGTTAGTAATGGGTGAATATTAGGTGCGATTTGTAAAGATAGTTTAGATT
AGATACTTTGCGTTTTTAGTTCCATCAATAAGTCAATATTCAGTTTAGTTAATAGGATTT
TTAACTTCAAATTAATTATAAGCTTCATGTTACATTTTCATGTAATATTGTTTAGACCCT
TTAATTAATAAATTTCTCTTTAGAATTGGTAAGAATAATTTTCTTTGAGTTGTGTAAAAG
AACTAGTAAAGTGTGTGTGTATTTGGGGAGGAAACTGTTTTTATTTGTTGCAATAAAGTA
GTAATAAGAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAA
(3219 bp)

- SilkBase 1999-2023 -