SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR2888c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_SWI/SNF-related_matrix-associated_actin-dependent_regulator_of_chromatin_subfamily_A_containing_DEAD/H_box_1_homolog_[Bombyx_mori]
Ontology
GO:0000166 F nucleotide binding
GO:0003677 F DNA binding
GO:0004386 F helicase activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006974 P cellular response to DNA damage stimulus
GO:0016568 P chromatin organization
GO:0016787 F hydrolase activity
GO:0045089 P positive regulation of innate immune response
GO:0050829 P defense response to Gram-negative bacterium
Transcript
Level		FPKM:5.37 TPM:5.26
ORF EntryO_TrvaFAMAMG1710_complete:A_TrvaFAMAMG_TR2888c0_g1_i1
Sequence
(Nucleotide)
ATTTTTTTTTCCGTCTAACCCCATTTCGATAACGCGCGATAAGGAACTTCGTTCCAATTA
TTTTGGAAACTGGTCATAAAAGACCTGAGGCTGCCAAAACTAAACTTTAGATTCTATAAA
AATAGCCAAAAAAAAACATTTTACCATTGATTATAACTTTGTTCTGAGCAATAAACAGCA
GTACTGTAATTTATACACTCCATTCCACAAAATAAACTATTTTACACAGATCTTAAGCAC
TTTGTTTATAAATATAATCTTGTCTCGTTATGTTAGAGTATGAATCACATTTGTTTGGAA
GAGGTCCATCACTTGTTGGGTGACGTCAATCCCAGAGCTGCTGATAATAATCGTACCACG
TTTTTCTGTTCTGTTGCCTCGTTTTCATCTTCTCCGGTGACATGTTTCTCCAGGTTGAGT
TTCTCCTGCGCGACCTGATATATTCCCTCCTCGATGGTGCCGGCGCTCAGCAGCCGGTAG
ATGGTGACGGGGCGCGTCTGACCCAGTCGGTGACATCTGTCTTCAGCCTGTTTATCATTA
TAAGGGTTGAAGTCTATATCATGTATGATGACAGTGTCTGCTGCAGTGAGATTGATGCCG
AGTCCACCGGCTTTTGTTGACAGAAGGAACACGAATATATCCTCTGTATTGTATTGGTCT
ATTAGCTCTTGTCTCTCCGTAACGGCAGTGCTTCCATCCAAGCGTAGATACTGATACCTC
CTGATGGTGAGGTAGGGTTCGATAATGTCCAGCATCATGGTGAACTGACTGAATATGAGC
ACCCGGTGACCCTCAGCCTTCAGTCTGGGTAGCATCTCGTCGAGCTTTTGGAATTTACCG
GAGTCTAATATTAATGATTCCGGTATCGTGTGCTGTTTGCAATACTGCTGCGCGAGCTGG
TGTATTTGGAAGTCTGATAGACAGAGCAGGTCCTGGAAGGCGTAGTGCTCGTTCTTCTCC
TTGTATGAGGGTTGCTGCACGAGGCGCGCGGCGATCTTCTTGAGCTGCGGCCCCTGGTAG
TGGTAGCGGAGGAGGAGGGGGTGGTTGGCCAGTTTGCGCATGTCCATCATCATCGCCATG
CCGCTTTGTTCTGTTGTTGCGTAGATCGCTCCATTCTTATCGGAGAACCCCGAGATCAGT
TCCTTGTACAATCGTTCCTGTTTTTCAGACATAGGACATAGTTCCGTATGATTAGTTTTG
TTCGGCAAGTCTTGTAACACATCTCGCTTCAGCCTCCGGAGTACAAACGGCTTCATGATG
CGTTTGGCTTGAATTATTTGACTCTGTTCGAAGGCTGGTTCATCATCTTCTTTGCTGTCA
CTCGATTTCTTTGTTTTTGATTTGGTATTCTTTTGGAACAAGCTCTTCAGGTCATTAGTC
TTCCCGAGGAATATGTGAGGCATCACGAAGCACAACAACGACATCAGTTCAATCAAATTG
TTCTGTAGCGGAGTCCCCGTTAGTAGCAGACGGTGCTTCGACTTAATTTTAAGTAGATTA
TCGTATCGTTGTGTGGACATATTCTTGAGCATGTGAGCTTCATCATACACTACATAGTGC
ATCGGAGTTATTCGGAACATCTTCCTCTCTTCAGGGCAACTGCTCACCATTGTATACGTA
GTAAGAACGACGTCATAGTTGCTGAGTCCCCGCGCGTACTCTATCCGCAGCTGTCGCCGC
TCGTCGGGGTGCCCGTAGTACTTGCTCACTCTCAGAGACGGACACCAGCGAGATAGCTCG
CTGCTCCAGTTATCTAAAGTAGAAGCCGGTACCACAATCAGATGCGTCCCTTTAGCTTGC
CCAGTCTCCTTCAGATGTGCCAGGAACGCTATGACCTGCACCGTCTTCCCGAGCCCCATC
TCGTCAGCCAGGATCCCGGATACTCCCTGCTTGTGCAGTACCGCTAGCCAGTTCAGACCC
ACAAGCTGATATGGGGCTAGCTTTAAACTAGGATCTAATATAGAAGGTTGTTTAAGTCTG
CCGGCGCCCGCCGCGACGGCCGCTTCTAATTGTTGAGCCAAACCGACACACTTCTTCATC
AACCGTTGTATGTTATTCCTGGTTGTTAGTAGCTCTTGAGTTGAGTTCAAAAGATCCGTG
CTTAGCATTTTGTTGCTGTTGAATTTTTCTACCATGTCCAGCCATCCTTTAAAAGGTCGC
AATGATATAATAGCTTCAGCTTTCTTCTGTGAACAACCGCTCAACATTGATAACTCAGTC
ATATTGCTTGTGTTTAGGAACTCAAATACTTTCTTCTTGTCACCGATTAGATCATCTGTC
ACTTCATTGTCAGAATCATCACTGTCATAAACACAATCATCTTTTCCTTTTTTAACACCG
TAATCATCATCTTCACTGCCACTACTGCCTCTTCTCACTCGTCCACCCTTAGATTCTATC
GGTTTCCTAACAACGAGTATTCTGTTAGGACCGCTCGTCACTCTCATGTTCATGTTACCG
TTGGGCCGAGATTGTGACGGAGCACTGAAGTAGGACGTGGATCCTTTGTCATTACTCTCT
GGGTCATGTTTGAGGAGTTCGTCCCTTGAACGCTCTTCGTTCCAGCCGTGCTTGACTAAA
GTGTTCTTTACAAACAGAGGTGAAATATCTGGGAACATTTCTAGCATGTTTCTAAAACGT
CTCTCCCTGACTGCAGGTGTTAGTTCAACTTGGACGGCCGGTTTCTTGTTTGGTGGTGAT
GCTTCATCGGAATCAGAATCCTGGACCCTGATCCTCTTGTACACAATCACTGGATTGGTT
TGAAGATGAGTAACATTAGTTGGGGCTTGCATCCTGATTATTTGTTGTTGAGGATTCGAC
GTTGATGCCTTGATCGTAACCTGGCTGTCAGAACCTGAGGGTTCGTTTGGTTTCCTTTGG
AACCTGTACTGTCTTAGATAACTCAACACACTAGGACTGTTACGTTCAGACATTTTACAC
GATGCATGCAGAATGTATGATACTATCCTTTATTTTAATTCAAAAGTTCTTTAATAAAAA
CCAACGAAAAAATTTACTGTTATCTATCATACCACTACAACACGGCAAGGAAACAACATT
TCAG
(3064 bp)

- SilkBase 1999-2023 -