SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23519c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		Putative_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_DHX15_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003725 F double-stranded RNA binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005681 C spliceosomal complex
GO:0005689 C U12-type spliceosomal complex
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0009636 P response to toxic substance
GO:0016787 F hydrolase activity
GO:0043279 P response to alkaloid
GO:0044822 F RNA binding
GO:0071008 C U2-type post-mRNA release spliceosomal complex
Transcript
Level		FPKM:39.09 TPM:38.30
ORF EntryO_TrvaFAMAMG28847_3prime_partial:A_TrvaFAMAMG_TR23519c0_g1_i1
Sequence
(Nucleotide)
TAACTGAATTAAGTGTTTTCGGTGTGGGTGTCGCCATTTTGTTAGCATTGTAAATTAATG
AAAAACTGTTGTAAAAGTGTATTTGTTAACTGAATTAAGTGTTTTATGTTTAAAATAAAA
TGTCCAAGCGACGTATAGAAGTTATGGATCCTTTTATAAAGAAAAAGAGGGAAGAGAAGG
CGGCTGCTGCAGCCAAGTCCGGGGCAAGCACGGAGCCCGAGTCTACCACCACATCCACAT
CAGCTTCCACGCCGGGAATCAATCCGTATACTGGTTTACCCCACTCACAGAAGTACCACG
AACTCCTCCGAAGAAGATTAGGGCTCCCAGTATGGGAATACAAAAACGACTTCATGAGAC
TCCTCAACACACACCAATGCATCGTATTAGTCGGAGAAACTGGGTCCGGGAAAACTACCC
AAATCCCACAATGGTCCGTAGAATTTGCTGCCGTCAGCCTGGGCAAATCCAAAGGCGTGG
CCTGCACCCAGCCCAGAAGAGTGGCCGCCATGTCTGTTGCCCAACGAGTGGCTGAAGAAA
TGGACGTGGCTTTGGGCCAAGAAGTGGGCTACAGTATCCGTTTCGAAGACTGTTCTGGGC
CACAAACTGTCCTTAAATATATGACAGATGGTATGTTGTTAAGAGAAGCTATGTCGGATC
CAATGCTGGAACAGTATAGGGTCATTTTGCTTGATGAAGCCCACGAGAGGACGTTAGCTA
CTGATATATTGATGGGGGTCCTAAAAGAGGTTATCAAACAGAGGTCAGACTTAAAACTGG
TTATTATGTCAGCGACCCTAGACGCTGGCAAGTTCCAGCATTATTTCGACAACGCACCAT
TGATGAATATTCCTGGTAGAACGCATCCAGTAGAGATATTCTACACGCCACAACCGGAAA
GAGATTATCTAGAAGCCGCAATCAGAACTGTGATCCAAATACACATGTGTGAAGAGATAT
CCGGAGATATATTACTGTTTTTGACGGGTCAAGAGGAAATTGAAGACGCTTGTAAGAGAA
TTAAGAGAGAAATAGACAATTTGGGGACTGATGCTGGTGAATTAAAGTGTATACCACTCT
ATTCGACGTTACCACCCAATCTGCAGCAACGGATCTTCGAACCAGCTCCTCCAAATCGAC
CAAACGGTGCAATAGGACGAAAAGTGGTAGTTTCTACCAACATAGCGGAGACTTCTTTGA
CCATAGACGGTGTGGTCTTCGTGATAGACCCAGGGTTTGCTAAGCAGAAGGTGTACAACC
CTAGAATAAGGGTGGAATCTTTGCTGGTCTCTCCTATTAGTAAGGCTTCGGCCCAGCAAA
GGGCTGGCAGGGCTGGAAGAACAAGACCGGGCAAATGTTTTAGATTGTATACAGAGAAAG
CTTATAAAGATGAAATGCAAGATAATACTTATCCTGAGATTTTGAGATCGAACTTAGGAT
CTGTAGTTTTGCAGCTGAAAAAA
(1463 bp)

- SilkBase 1999-2023 -