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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23515c3_g3_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_host_cell_factor-like,_partial_[Papilio_machaon]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000123 C histone acetyltransferase complex
GO:0001205 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0003682 F chromatin binding
GO:0003713 F transcription coactivator activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005671 C obsolete Ada2/Gcn5/Ada3 transcription activator complex
GO:0005737 C cytoplasm
GO:0005739 C mitochondrion
GO:0006355 P regulation of transcription, DNA-templated
GO:0006366 P transcription by RNA polymerase II
GO:0007049 P cell cycle
GO:0010628 P positive regulation of gene expression
GO:0016020 C membrane
GO:0016568 P chromatin organization
GO:0019046 P release from viral latency
GO:0030424 C axon
GO:0030425 C dendrite
GO:0042802 F identical protein binding
GO:0043025 C neuronal cell body
GO:0043254 P regulation of protein-containing complex assembly
GO:0043981 P histone H4-K5 acetylation
GO:0043982 P histone H4-K8 acetylation
GO:0043984 P histone H4-K16 acetylation
GO:0043995 F histone acetyltransferase activity (H4-K5 specific)
GO:0043996 F histone acetyltransferase activity (H4-K8 specific)
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046972 F histone acetyltransferase activity (H4-K16 specific)
GO:0048188 C Set1C/COMPASS complex
GO:0050821 P protein stabilization
GO:0070461 C SAGA-type complex
GO:0070688 C obsolete MLL5-L complex
GO:0071339 C MLL1 complex
GO:0071407 P cellular response to organic cyclic compound
Transcript
Level		FPKM:10.17 TPM:9.97
ORF EntryO_TrvaFAMAMG28753_complete:A_TrvaFAMAMG_TR23515c3_g3_i2
Sequence
(Nucleotide)
ATCCCATATTATTTGTTCATTTATACTTATGTGTATTTTGTACTTATTATAGCCCGTGTC
TTAGAAATAGAAAGTAAATTATTAAAATAGAAGTAACGTAGTACATAACTTGATAACGCT
ACTTTAACTTTGTTGTTTTTATTAATTCATATTTCGTAAGTGTATACTAGGTATGTTCCG
AATGTCGATTTTTGGAGTCGAATCGAATGCGAATATTCATTATCGACATCGCGAATGCGA
ATGTTGTTCTTTTCAACTAAAAGTTCAAGATTTTTTTACTGTACCTACCTATATTTTACA
TATACTGGATCTAATTGGAATGAGTACTTGGAGAGCCTCTCTCCAACAAATAATTGAAAC
CCCCCCTATACATTACGTTGTCAACGGAAGTTGGTAGACCCATCGAGTTTCATTTTAAAG
GGCTGGTAGTGGTCTTTATTTCATTCCAAAACCCTCTACCACACAACACCCACCCAACTT
TTGTCAAAACATTCGCATATTTTTTTTTGCGAATGCGAATATTGAAAAAATGCGAATATT
CGTTACATCCCTAGTATATATTATGTTCCTACTAGCAATGTAAAGTTGAAGCAAGAACTA
AGTTCACAAAATTTAATTTCAATTGTGTTTTGAACATCTAAGTGATCGTAGTTTCGGAGA
TAATTCATCTGTTTGAAAGTCATCTATGAAAAGATATAGGTATTTAGCACCCATCATTAT
TAGTACAATAATATGTATCGCATCGATTATAATTTTTTTCCACGGTTTGCTTTACATTAC
TAGTAGTGAAAATATGTCCTTCGAAGACCATTTTTATTCAGAATTTGCATACTTACTTAA
CGGGTAATTATGTGAAATCGTGCATCATCAATCTCTTTGCTGTATTCAAAATTATAGAAA
TTAATTTTGTATCTATCGGTCATCAAAACAAACATTTATTAACGCCAATTGCTTGCCATT
CTTCAATTGTAATAGTTAACCAAGTTATCACAACAGACACTATCGAACACCCAATATTGT
CAGATGGTCACCGGGCATGCGAGGGTCCAGTTCATCTGAAGGCGGCGGTATATTGGACTT
CGTGGACGGCCTGGGCCCGGGACAACTGGTCGGGAGACAGTTCCTGGGCTCCACGTCGCT
AGGAGACGTCCAACTGTCCTTGTGCTACCAGAAAGGATTCCTTGAGGTAGAAGTAATAAG
AGCGCGAGGGTTACAGGCGAGGCACGGAAGTCGAACCCTTCCTGCGCCCTATGTGAAGGT
GTACCTCGTGAACGGGAAGCGATGTATCGCGAAGGCTAAGACGAGCACTGCGCGGAGAAC
TCTCGATCCTCTTTATCAACAGACTCTTACATTTAGAGAAAACTTCAAAGGATGCGTATT
ACAGGTAACAGTGTGGGGTGACTACGGTCGCATCGAGGGAAAGAAAGTATTTATGGGCGT
GGCCCAAATAATGTTAGACGACATTAACCTATCCAATATCGTAATTGGATGGTACAAATT
ATATGGAACTACTTCTCTAGTCGGTAATGTCAAAGAAAGTTACTTTCTCCAAAACGTAAT
AAGAAACGCGGATGATTCCCAACAAATAAAACAATAACAGTTTTTCTGTAACGAAACCGA
ATTTTGTTCATCGGCTGGAGCATAATTCGGAGAAATTACGGAAAAACAAAGAATCGTCCG
AAATAATTTAGTGGTACTGCTTTAATCATAATAAAATAATATGCATAATATTATATATCG
AATAATATAGGAATTTTCTATAAGCGAAAGGTAATTTAATTGATTTGTATTATTTCTAAT
GCCTACCGAAGTTTTGAATAGATAGCATTTTATAGCAATGAAACAAGTGTATAGTGTACT
CGATAACATGTAATTAATAATTAAAAGCCAAATTACATTTTATTGCATTTTCTTTTCAAC
GAACCCTGAATAGTTACCACATTGTAACACCATAGTGATTTATAAAATGATTATATTCTT
TTATATTTCGTATATGTCATGATTATAGCAACACTTGTTTTTGTAAAACGTGACGTACAA
TGTGGTAATTTATTGCATATGAATACAATTTGATTCTATCGACTTACTTAGAACATAAAG
AACGTACTTGACACTTAAAACGGATATGTAAAATCTATTTCATTTCATAATCCTTCTAAT
TCAATCGTCCATCATTTTAAACCATCTACAAGTTTAGGCACTTAAAATTACGTTACAAAA
CGTACGAAAATAATGATGGAATTTTATTTCCACTTATAAAATGTCTTTAAATGAGATTTC
ATTAATTGAATCGATGCAGACAGTCGGCAGATAAACACTTATGTTTCAAACACACTATAA
GTCTTGAATATAATTATAATAGTTAATGTACTACTTGTTTGGGTTGTTTGGAAGGAGACG
CGCCGGGCAGCCGGCCCTCGCCCGCTCGCTTCACGCCGGTCGATTTGATATCTTGCAGCC
ACCTGACCTGCGTGGCGGGTCCGTATCCCTTCTCGTTGCGCGCGGCGATGCGGAAGATGA
TGGCGGGCTTGGTGGAGGAGTCCACGTGCGCGGCGCTCAGCGACGACTGCGGCACCACGC
ACGTGTTCGCCTTGCCGCAGTACACGCGCACGAACGCCAGCTGAGACTTGGCCGCTTCCT
TTGGTTGACTGTTAGAACGCACTGCCAGATAGACAGAATACTCGAATATTCCTTCGGCGG
CAACTTGCGGCGGCTCCCACGATAAATGGGCTCCTTCTACAGACTTCGATATTTTGATAG
CTGATGGTGCACCCGGAAACCCAGGAAGGCAAGTTTTGAAAGCAGATTCTTCACTGAACT
CTCCCTTGCCACACGAGTTGATGGCAGCTATTCTGAATTTGTAAGCCGTGCCGTGCTCGA
GGGGCGTGGTCGGTAGTCCCGTCAACTCAGGTAATGCGTCCAATGATAAATTAGACAAGT
CTATGTTTGGATCCGATATGTAATTTTGTACCGTAAAAGATGTCCCTTTAACAATGCCAA
CTGTATACCACGCATCTTCATCTACTTTCTTAGCATCTTCTGGTTCAGCCTGTTCATGAT
GATGTAGTGCTGCACTGGCGAGTGTGGCGAGCGCGTGCGCCGCGATGGTGGAGGGCAGGG
TGCTGCTGACGGCGCCCTCCGCCTCGCCGCCCGCGACCCCTCCTACTGACGATGACACCG
ACGTCGCACCGCCCTCCTCGCCTTGTGTAAGCGTCGGTGTAGAAGTAGGCGATAATAGAG
CGGCAGATCCGTTGGCCGTCATAGTCAACAGCGGCATTGAGGACTCGGTGGCGGCCGCCG
CGGCATCTCCCCCGCTTTCCATCTCCGACGTGTCCGCGTCGAATCTGCTTGACAGAAATT
TAAGATATTCGTTCGCAGTGTGCTGCTGGGGCGTAATCGAAAACGAATGCCCTAGGTTCG
GACCGTTGGCTGTGGACGATATTAAAGACTGATCCAACTGGCCGCTACTCGAAATATCTG
CTCCAGCCTCTGCTGTACTCGAGCTTATTCCTGTGCTGAGGGCCTCTTGTGCCGCACTGC
TAATGTCATTGACATCATCACTGCTTGCCACCCCTCCCTCAGCTAAATCATCATCCATGG
TGCTTGATTCATCATCTTGAACATTGGATGTCCCTTCAACAATGCCCACACCACTGTCTG
TTGGCAAAACAGCTGAACTAATTGATTGATCAGGAGATTCCTCAGCCTCACCTAGACCTT
CTCCTTCTTTTATCATGGAATCCAATTGGCTATCATGATCATCTTGGGGTGAATTCTCTT
CAGTCTCTGCAGGTGTAGATAGACAGTTGTCTCCTATGTATGCTGATTCATCATTTACAA
CTCCTGGTGCAGTCTCATCAATGTCCATTTCATCTTCAATATCTGCATGACCTTGCTCAA
GTACAGGCAGTTCTTCCTCAACAGGAGGTGCATTAGAAGGCTCTACATCCAAAGCATCGC
TGCTGCTAGTAGGAGCACCATTTGCAGCGGTGTCTTCAGGCTCAGTAATCACATCATCAC
TTGCTGAATTATTATCAGGTAATTCTTCAATAGCATCAGCAACCTGGTGTTCGGCTAGAG
GCGACACTTCCGCGCCATCGTGTAAATCACTATGAATGGCAGAGTCTGATTCCATTTTTA
TTTTATAACCACTTCTTTACTAATAGAACTCACAAATTTATTGAATTTTAAACAAGAAAT
AAACTGAAACATTAAGCATTTTCAGAAATATTGTGAAAAACGTAGAAATTTTGACACTTC
GTCAAGTTTGGAAAAGCTTTTACGATTGGTC
(4291 bp)

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