SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23509c0_g1_i8
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha-1(XVIII)_chain_isoform_X3_[Bombyx_mori]
Ontology
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005737 C cytoplasm
GO:0005788 C endoplasmic reticulum lumen
GO:0031012 C extracellular matrix
Transcript
Level		FPKM:0.69 TPM:0.67
ORF EntryO_TrvaFAMAMG28662_3prime_partial:A_TrvaFAMAMG_TR23509c0_g1_i8
Sequence
(Nucleotide)
TATAATTGGTTTTTGAACAGAGTAAATTTTTTTCAGGTTATTCTCTGAGACTTCGCGGGG
ACAAAGGAGACCGAGGATCTAGGGGACCTCCTGGAGAATCTATTAGAGGTCCACCTGGAC
CACCGGGACCGCCTGGACCTCCTGGACCTCCAGGGTCAACGACAGAGAGCTCGGGATTCG
GTGACGATAGGAGTTCCGTGAAGCAAATCTTCGGAGAGAACTACTCATCGCTCGGACAAT
GTGGTTGCAATGCAAGCACCATTTTGTCTCTGGTACAAACTGCACCTGAACTGAGGGGTC
CTCCTGGGCCTCCGGGGATGGTAGGGGCTGATGGAAGAACAGGGCCCCCTGGAATGCCGG
GTCAGCCTGGAGTTATCGGTGATCGTGGCCCAATGGGCCCTAGAGGTGACAAAGGGGATA
GGGGTGACTCTGGGCCAAGGGGTCACGAAGGGCAACCTGGGCCAAAAGGTGAGGCAGGCG
TGGACGGTCGTCCCGGAACTCCTGGACCACCCGGGCCACCGGGACCACCTGGAACTCCAG
ATTATAACAACTTTGAATCTAATTGGAAACCTAGGCAAATATACAAGGAATCTCTGATGG
GAACATACGGAAGTGCCATCGGTAGACCCGGTGCTCCCGGGCCTAAAGGTGATTCGGGGC
AACCTGGACCAATCGGACCTCAAGGTGAACGAGGTTTCCCTGGGCAGAAAGGGGAAAGAG
GACAAGCAGGTGTAACAGGAACTAAAGGGGATCGGGGTCATCCAGGATCACCAGGTGATA
GGGGAATTAAAGGAGATCGTGGTAACCCAGGATTGGATGGTAGACCAGGTATTCCTGGTG
CTAACGGAAGACCAGCAGACAAAGGCGAAAAGGGTGAACGTGGAGAACCTGGTCCTCCTG
GTCCACCTACATCAGGAGTTTTTAATGGAGATTCCGAGTTTATGGTTGCAGGTTCTCAAC
TTGAAAGTGTTAAAGGTGACAAAGGAGAAAAGGGTGAAAAAGGAACTCGCGGCAATGATG
GACCCCCAGGATTTCCAGGAAAAGACGGAAAGCCCGGTGAGAGGGGTGACCTCGGGCCAT
CTGGGCTACCGGGCATGGCAGGGCCTGCTGGACCACATGGCCCTAAAGGAGATAGGGGGG
AGAGAGGACCACCAGGACCTATCAGTGTTGCTTCTTCAGGAACAGACATCATTACTGTAA
AGGGTGACAAAGGTGACCCAGGTCTCAGAGGTCGGAGAGGTCGGCCCGGGCCAAGCGGAC
CTCGTGGCATACAGGGCCTACAGGGCATACAGGGTCCTCCAGGCCCATCCGGCCGTCCAG
GGGATAAAGGGGAAACTGGACTACCAGGATGGATGAACTCAAAGGGTCGCCCAGGAACTC
TTGGGCCACCAGGTGTGCCTGGCCCAGTGGGACCTAAAGGTGAAAAGGGAGACCCGGGAG
TGAATGTTTTAGATGTTTCTATGTTCAAAGGCGAAAAAGGTGATCGAGGCTTTGACGGAA
CACCTGGTCTTCCAGGAGCTCAAGGTCCACCCGGTCCCCCAGGGAAATCTGATTCCATAC
AATATATCCCAGGACCGCCTGGACCTCCTGGACCACCTGGGACCCCTGGAGTTTCATTAG
TAGGCCCTAAAGGTGAACCTGGAGCGGGATATTACGGAGAGAGTACACACGGCAAAGAAA
CTATGTTTGGAAGACCAATTCACAAAAGTCCTATGGATGAACTAAAAGCGTTGAAAGATA
GAGAACGCGACAGAGCATTCATATCAAAAAGCCAACTGACTGACGATTCCTATGGACAAA
GAACAGTACCAGGCGCTGCTGTCTTCCAAACCACTGAGGAAATGCTTAAGCTCGCATCAT
CAAGCCCCGTTGGTGCTTTAGCATAC
(1886 bp)

- SilkBase 1999-2023 -