SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
NameA_TrvaFAMAMG_TR23509c0_g1_i4
Scaffold_id
NCBI non-redundant
(nr)
PREDICTED:_collagen_alpha-1(XVIII)_chain_isoform_X4_[Bombyx_mori]
Ontology
GO:0005576 C extracellular region
GO:0005578 C extracellular matrix
GO:0005581 C collagen trimer
GO:0005737 C cytoplasm
GO:0005788 C endoplasmic reticulum lumen
GO:0031012 C extracellular matrix
Transcript
Level
FPKM:0.62 TPM:0.61
ORF EntryO_TrvaFAMAMG28646_3prime_partial:A_TrvaFAMAMG_TR23509c0_g1_i4
Sequence
(Nucleotide)
GCTGTATGTCACGTTTCAGAAATGTCGAGTGTGAGCGTGTGTGAGTCCACGTGAATGACA
GTATCGCAGCGAAAGTGTTTTGATAAGTGAATTTCAATTTGAAATGTTGTGAGGATTACA
AAGATGGAGCGTTTCCGATACACTAGTCTACCATTCTTGTTGCTGGTGACCGCGTGTTGT
GCCACAGATGGAATGTTTGGCTCATCTATGTATCAAAATGATGTTCCTGAGTATGACTTA
CTCCACGCAATCGGGGTCCCGTTCAGCAACCCGAAGACCCAATACTTCGACGAGGGTTTA
GACGGGTTTCCAGCTTACGGTCTGATGCCAGGATCAGACATAAAGTCGCCCTACCGCCTC
TTCATGCCCGAGAAACTTTACTCCGAGTTCTCAATCACAGCAACTGTCAGACCAGCTAAC
AAAGATGGCGGGTTTCTGTTTTCGGTTGTCAATCCGCTGGAGACTGTGGTACAGTTGGGT
GTGCAGCTGATTCCTTCAGGGCCAGGGCTGATGAATATATCGCTGCTGTATACCGATGCT
AATGTGTACGCGTTGTCGCAGACGATAGCTTCGTTTGTGGTACCGACCTTTGCGAAGAAA
TGGAGCAGGTTCGCTCTGAAAGTGTCATTAGAAAATGTGACACTTTACTTGAACTGTCAT
GAATTTGACACTGTGGTTGTCAAAAGGAATCCAATGGAGCTGGTATTCGACTCTGCTTCC
ACTCTCTATGTGGGCCAAGCAGGACCTTTAATAAGAGGGGCTTTCCATGGAGCATTTCAA
GAGCTGAAACTATACGGATCTCCGACACAAGCAGAGGTGCAATGTATCAACACATTTGAG
GATATAGATAAAGGAGCTGAAGGGGACGAAATCGATATAGACAACTTTTTGGTGGATCAA
GAGGAAGATGGGGAAGGTTCTGGAAGGTACGGAACTATACCGCCATTTCCACCACCACCT
CCAGGCTTAGATGGTTATTCTCTGAGACTTCGCGGGGACAAAGGAGACCGAGGATCTAGG
GGACCTCCTGGAGAATCTATTAGAGGTCCACCTGGACCACCGGGACCGCCTGGACCTCCT
GGACCTCCAGGGTCAACGACAGAGAGCTCGGGATTCGGTGACGATAGGAGTTCCGTGAAG
CAAATCTTCGGAGAGAACTACTCATCGCTCGGACAATGTGGTTGCAATGCAAGCACCATT
TTGTCTCTGGTACAAACTGCACCTGAACTGAGGGGTCCTCCTGGGCCTCCGGGGATGGTA
GGGGCTGATGGAAGAACAGGGCCCCCTGGAATGCCGGGTCAGCCTGGAGTTATCGGTGAT
CGTGGCCCAATGGGCCCTAGAGGTGACAAAGGGGATAGGGGTGACTCTGGGCCAAGGGGT
CACGAAGGGCAACCTGGGCCAAAAGGTGAGGCAGGCGTGGACGGTCGTCCCGGAACTCCT
GGACCACCCGGGCCACCGGGACCACCTGGAACTCCAGATTATAACAACTTTGAATCTAAT
TGGAAACCTAGGCAAATATACAAGGAATCTCTGATGGGAACATACGGAAGTGCCATCGGT
AGACCCGGTGCTCCCGGGCCTAAAGGTGATTCGGGGCAACCTGGACCAATCGGACCTCAA
GGTGAACGAGGTTTCCCTGGGCAGAAAGGGGAAAGAGGACAAGCAGGTGTAACAGGAACT
AAAGGGGATCGGGGTCATCCAGGATCACCAGGTGATAGGGGAATTAAAGGAGATCGTGGT
AACCCAGGATTGGATGGTAGACCAGGTATTCCTGGTGCTAACGGAAGACCAGCAGACAAA
GGCGAAAAGGGTGAACGTGGAGAACCTGGTCCTCCTGGTCCACCTACATCAGGAGTTTTT
AATGGAGATTCCGAGTTTATGGTTGCAGGTTCTCAACTTGAAAGTGTTAAAGGTGACAAA
GGAGAAAAGGGTGAAAAAGGAACTCGCGGCAATGATGGACCCCCAGGATTTCCAGGAAAA
GACGGAAAGCCCGGTGAGAGGGGTGACCTCGGGCCATCTGGGCTACCGGGCATGGCAGGG
CCTGCTGGACCACATGGCCCTAAAGGAGATAGGGGGGAGAGAGGACCACCAGGACCTATC
AGTGTTGCTTCTTCAGGAACAGACATCATTACTGTAAAGGGTGACAAAGGTGACCCAGGT
CTCAGAGGTCGGAGAGGTCGGCCCGGGCCAAGCGGACCTCGTGGCATACAGGGCCTACAG
GGCATACAGGGTCCTCCAGGCCCATCCGGCCGTCCAGGGGATAAAGGGGAAACTGGACTA
CCAGGATGGATGAACTCAAAGGGTCGCCCAGGAACTCTTGGGCCACCAGGTGTGCCTGGC
CCAGTGGGACCTAAAGGTGAAAAGGGAGACCCGGGAGTGAATGTTTTAGATGTTTCTATG
TTCAAAGGCGAAAAAGGTGATCGAGGCTTTGACGGAACACCTGGTCTTCCAGGAGCTCAA
GGTCCACCCGGTCCCCCAGGGAAATCTGATTCCATACAATATATCCCAGGACCGCCTGGA
CCTCCTGGACCACCTGGGACCCCTGGAGTTTCATTAGTAGGCCCTAAAGGTGAACCTGGA
GCGGGATATTACGGAGAGAGTACACACGGCAAAGAAACTATGTTTGGAAGACCAACATTC
ATATCAAAAAGCCAACTGACTGACGATTCCTATGGACAAAGAACAGTACCAGGCGCTGCT
GTCTTCCAAACCACTGAGGAAATGCTTAAGCTCGCATCATCAAGCCCCGTTGGTGCTTTA
GCATAC
(2766 bp)

- SilkBase 1999-2023 -