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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23505c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		pol_polyprotein_[Lasius_niger]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:10.78 TPM:10.56
ORF EntryO_TrvaFAMAMG28607_complete:A_TrvaFAMAMG_TR23505c0_g1_i1
Sequence
(Nucleotide)
GTAATAATCAAAGACTGTTACCTAATTTCTTATTGTGCTGTGATTAAGACTATAACATAT
AATATCTGGATTGTGATTGTGAAACTGTAATAAACGGATTGTCTATCTGCAAACGTTGTC
TTCTTCACCAACCAACCGCAGTACCTACTAGTATACGCAACCACATCCCCAAACTGGTGA
CCCCGTTGAAGCACGCAAAATGGAGAGCAAGCAAGACAGCGACACGACAACCGACATCCA
CAAAGTAGGCGTCAGGATGCCTCCGTTCTGGGCCGAAGACCCGGAAATGTGGTTCGCACA
GGTGGAAGGGCAATTCGCCATCGCGGGAATCACAAGCGACGCCACACGTTTCAACTACAT
TATCGGCCATCTCGACCACCAATACTCCAGCGAAATCAGAGACATAATCATTAACCCACC
GGAAACCAACAAGTACGTGAAACTAAAAACGGAGATTACTAAAAGATTAAGTGCATCACA
CGAAAAAAAGATTAAACAGTTATTGATCCACGAAGAGTTAGGCGATAGAAAACCGTCACA
GTTCCTACGACACCTTCAAACATTGGCAGGCCCAAAAGTGCCCGACGATTTTTTAAAGAC
GATTTGGACCAGCCGTCTACCTCACGGCATTCAAACTGTTTTGGCGGGACAACCCAGCAC
ATCATCTCTAGAAGATCTCGCTGACCTCGCAGATCGAGCTTCCGAGTTGGTCTCCACAGC
ACCTAGAATCGCCGCAGTGAGTAACTCACCATCATCATCAGACTCAATACTGCAAGAACT
GCGACAAGAGGTTGCAGAACTCCGCCGAGAACTGCAGCAAATCGGTTCAAATCGTGGCCG
GTCAAGACACCGTTCACCAAGAAGAGAAGAAACAAAAACGGCAAACCAGCGGTCGGCGTC
CAGCTACAGGAAATTCCCAATTTGCTGGTACCACTTCAAATTTGCAGAGGACGCAAAAAA
GTGCATACGACCCTGTGACTACTCGTCGGAAAACTCCAAAGGCAGTCGTTAACGGCGACA
AACGACAGCCCCACCTCATCGACTGGTCGCCTCTTCATCACGGATCGAACTTCGAAGACG
CAATTCCTCGTCGACACAGGCAGCGACTTGTGTGTTTTCCCTCGATCCCTGGTTCGCGAT
CGACGTTCGAAGACCGGTTATAACTTGTGTGCAGCAAACGGATCTAGTATTAGTACATAT
GGTAACATTAATTTAGAATTAGATTTCGGTTTACGCACAAATTTTGTATGGCAATTTACT
GTCGCCGACGTAACGAAACCAATAATCGGTGTTGATTTCTTAAATCATTATGCATTAATA
GTCGATTGCAAGAACAAAAGAATTATCGACAATGTCACGACCCTATCGACTAGTGCTGTA
CCATGTAACATTTGTAACCTATCGATTCAATCGATTAGGGTTGTGACAGGTAACAGTCGA
TATCATAAAATTCTTATAGATTTTCCAGAAATCACTCGACCCGCGGGGATACATCGTATA
ACACCACACAACACAGTACATCACATACACACTTCCCCAGGGCCACCGATTTCCTGTACA
CCGCGTAGGTTGGCTCCCGACAAGTTAAAAATTGCCAAAGAGGAATTTAAGGTAATGTTA
CAGAACGGTACAGCCAGGCCCTCCAGTTCACCGTGGGCATCTCCACTTCACTTGGCACCT
AAGAAGAATAGTGGATGGCGCCCCTGTGGGGATTACCGTATGCTCAATTCTAGGACAGTG
CCGGACAAATATCCAGTGAGGCACATTCACGACTTTTCTCATAGTTTGGCAGGATGTTCA
ATATTTTCGGCCATTGACCTGGAAAAAGCCTATAACCAGATACCGGTGAACCCAGCTGAT
ATTCCTAAGACTGCAGTAACGACACCTTTTGGTTTGTATGAGTTTCCTTACATGAATTTC
GGGTTAAGAAACGCTGGGCAAACCTTCCAGCGGTTCGTGGACGAGATGATGAGGGGACTC
GACTTTGTATATTGTTACTTGGACGATTTTTTAATTTTTTCAAAGGATGAGAAACAACAC
GAAAGTCATCTTCGTCAGGTATTCCAGAAGCTTAAGGACTACGGTATGTTAATTAATCCC
AGCAAATGTGTTTTAGGTGTTAAAGAAATCTCGTTCCTAGGATACACGATTTCCGACAAC
GGCTGCAGACCACTGGAGACGAAGGTAGAGGCCATTAAAAATTTTCCACCACCAATCAAC
GTTCGTCAACTTAGAGCCTTTTTGGGGATGGTAAACTTTTATAGGAGATTCCTTCCCAAA
GCAGCTGAGTTACAAGCGCCTCTCCACGTTCTACTGTCAGGTTCACTCAAAGGTGCACAT
CCCATTAACCTTACCGAGGATATGCGAGCAGCGTTTGATGCTTGCAAAGAAAGCCTTTCT
AAGGCTGCTTTGTTGGCACACCCAGACTGCTCCGCCAAACTAGCACTGGTAACAGACGCC
TCTGATAACGCCATCGGGGCAGTTCTGCAGCAGCACAAAGACGGTGAGTGGCAACCTTTA
GGTTTCTTTTCAAGAAAATTAAGCCCATCTCAATCAAAATATTCACCATACGACAGAGAA
CTACTCGCAATATATGAAGCAATCAAATACTTTAGGCATATGCTTGAGGCTAGGCATTTC
GTTATTTATACCGATCACAAACCGATTAGCTTTGCATTTCATGAGAGAAAAAACAATTGT
TCGCCCAGGCAATTTAGGCACCTAGACTTCATTGCACAATTTACGACGGACATACGTCAT
ATAGCCGGCAAAGACAACGTGGTTGCCGATGCTCTGTCCCGAGTAGAAGCGTTATCAAAG
CCAGTATGTCTCCAAACAATAGCCCAACATCAAGAAGCCGACTCGGACTTACAGCAGTTG
TTAGAATCAAACACTACGTCTCTGAAATTGCAAAAACTTAACGTTCCTGGAAGTAGCCAT
TTTTTGTACTGCGACGTCAGTACAGCAACTTCTAGACCTTACGTCCCAGCAGACTTACGA
AAGCAAGTTTTTGACAGCCTTCATTCTTTGAGTCACCCCGGGCCCAATGCTTCGGCAAAA
ATGGTTGCAGAGCGCTTTGTATGGCCAAGTATTCGCAAAGACTGCAGAGAGTGGGCGCGC
TGTTGTTTGCATTGTCAGCGAGCTAAAGTTACGCGTCACGTGACTTCTCCGCTGGGCACC
TTCACCCTACCACGCGCCCGCTTCAAAGAGATCCACATTGATCTGATCGGACCACTGCCA
ATCTCAAACGGATTCAGGTATTGTCTCACGGCAGTAGACAGGTTCACCCGCTGGCCCGAG
GCGATACCGATCGAGGACATCACAGCAGAAACCGTGGCTAAGGCATTACTCGCAGGATGG
ATTGCTCGATTCGGTTCTCCTACTGACATTACGACTGATAGAGGCCGACAGTTCGAATCG
GCCTTGTTCCAACACCTGTCAAAACTAACAGGATTCGAACACAAAAGAACCACAGCGTAC
CACCCTGCGTGTAATGGCCTAGTTGAACGTTTCCATCGCCAGCTCAAAGCCGCAATAGTT
TGCCATGGAAGCGAAAGGTGGACCGAGTCACTTCCATGGGTTCTCTTAGGCATACGAGCT
TCTTTTAAAGAAGATCTACAGACATCTTCCGCAGAACTAGTTTTTGGAGAGCCACTGCGT
CTTCCCGGAGATTTCTTCGAACCGACTGAAATCGGCAACTCAGATTTCACCGATTTTTCC
ACCAGGCTCCGCAAGATCGTGGAAAAGGTAAGTCCTGTTACAACTTCTAGACACTGCCAG
CCAAAAATTTTTGTTTATAAGGAACTCGAGACCTGCGAGTACATTTTCCTTCGTGATGAT
GCCTTGCGCGGTTCTCTTCAACCAGCATATTCCGGACCTCACAAAGTTTTAACGAGAGGT
AATAAAGTTTTTAAGATTCTCCTCAATAATAAAGAAGCTACCGTATCCATAGACCGAATC
AAACCAGCATTCATTTTATCGATTTCCCACGACGAACCACCTAGTAATAACGAACCGGGA
TATACAACCCGTTCCGGTCGTCGGGTGAAATTTAAGGATTATTATCGCCCGTAGCCCGGT
CTCTGGAGGGGAGTGTGTAGGTAACCTTCACTATAGCATAGTTTAGTATTATATTTTATT
TATATACCACATCAAACACCCCAATTATAAATTATATATCCATCATTTATCCATGTATAG
ATCAACACTCGACAAGCATTACACATACATCGAGCATTCAGACATTCACAACTCAAGCAC
AAGTTATAAATATAACAAGCAACACCGCGCGTAATTCTAGTCTCGGCGGCTAGGTACATA
CGACATGGCCTAGGTACGTGACTCGCGACACGTAGGCGTAGCTAGCCGCCCGCAGCCTGC
ACCCCTCAAGGCAGAGGCATTGCGCGCGCGTCGCTAGTCGACAGCCAGAGCTCTGTGGCG
CACCACCCGCGCGCTCGTTGTTTTCCGCTCACGTAGTAACGACGCGATCTTAGTAATAAT
CAAAGACTGTTACCTAATTTCTTATTGTGCTGTGATTAAGACTATAACATATAATATCTG
GATTGTGATTGTGAAACTGTAATAAACGGATTGTCTATCTGCAAACGTTGTCTTCTTCAC
CAACCAACCGCAGTACCTACTAGTATACACAACCACTTCCCCAAAAACTATTTATCTAGA
GATAGCCTGGATAGCCAGGTCATCTCCTTATACCTGCACTGCCACCTACTGCGTATGTTT
AGAATACGGCTTAGGTGGTAAAATGTGTCTTTTTACTCTACGTAGATTGAACCTAGAAGA
AGAATACACCCTGGAGGTAACGTCGTCCATAGAATACATCTTACAGTTTGTACCGAGTGG
TGATCAGGGAGACTACCCGAGCCGTCTGTGGGTGAGGAGCGTTGGCGGCGATACATCGCG
ACCGCTGCTTCTCACTGCTAGAACTAAAACTGGAGCGACGACATGGCAGCTGCCATACTA
CCTGCAGTCGGAGTCGGACGAGGAGGCGGACACGAAGCCCCCGCTGGTGTGGGAGCTGGA
GCGCACGCTGTGCTGGGACGACTCCCGCGCGCCCGCCGAGTCCGGCTGCGAGTCCGGGGC
GGAGGGCGGCGAGCGCGGCTTCGTGCTGCACCTCGCCTCCGCCTGCGCCGCGCCGCTCAC
CGTCACGCTGCGAGCCGCGCCCGCCAGGACCTGGCTGCTCGCCTTCGAGACACCTAATGT
CGTCACAGCTACACCGACAGGTCCGGGAGTGAACTACTACGAGTTCCTGCCGTCTCAGAA
CAGCATCCGTCTGATCGTGGAGTCGGAGGACGAGGTGTGCACCACGGTCTCCGTACAACG
CTACACGTGCCCCCTAGCGGAGACTCTAGACGAGATTAACTTCGCGACGCTCAGGATGAC
CGTCATGCGCTCCGGGGCTGTGCAGCTCGCTCGCAGCGCGTACCCGCACGGGTTCTACGT
GGTGTCGCTGGTGCACGGCTCGGACCGCGCGTGCTCGGGCGCCGACACGCCGAGCGAGGA
CTGGCTGTGGGAGGCGGCCATGTGGGAGCCCGCGCATGCGCAACACCACGCGCGCACCAC
CACTAGGATCAAGACGCTCACACTCACTGTCAGGGCGTCGCTGTCTCGCGAGCAGTACCT
GGTGGGCGTGGGTGTGACGGTGGCGGTGTTCGCGTTGTTCTACGCGGGGTTCGCGGCGCT
GGTGCTGGCGCAGCGCTGGCCTCGCTTCGCCAAGTACACCGCGCCCAAAGCTGTGCTCGC
TGACGTCACTAAGTCTGAAAACGGCGCAGTATCCGAGGTAGGCAGTACTACAATGACGAC
GACCAGGAGACGTCGTGACTCCGATGCGACGTTCGACAGCAGCGACATGAGTGACACAGA
CTCGGAGTCGGAGTCTCCTCGGTCAAAGCGCACCGCCTTCAACGGCACCCCTACTACCAC
AAACACCGCCGCCTCCTTCGCCTCCCCCGCCTCCCCCGCTACCCCCCACACTCCGGCCAC
CCCTGACTCTACTTCAAGTCCTACAGTTGCCACCTCAACCCCGGTCAGGAGTTCCGTGGT
AGTCTCACCTCCGGAGCGGGTTAACGGTGCTGTTACCAGTGAGGCTGACACCGTGGAAGT
CGCTGCGCAACAAACAGAACCAGCGAGTCGTCCGTTCGGTCTGCCTGCGCGGCTGCACGT
GGCGGCGCTGTCGCGGCGCGGCGGGCGCGTGCTCCGGGCGCGCTCCAACCGCTACCTCTA
CACGCTCTACACCGTCGCCGTCTTCTACGCGCTGCCCGTGCTGCAGTTCGTCGCCGCCTT
CCAGCTGATGCTGAACATATCGGGTTCGCTGGACATGTGCTACTACAACTTCCTGTGCGC
CCACCCGGCGGGCGCGCTGTCCGACTTCAACCACGTGTTCTCCAACCTCGGCTACTTGCT
GCTCGGCGCGCTCTTTATGCTGCAGCTCCGTAGACGCAAGCGGAACAGGAAGCGAGCGCC
CAGGGATGAGGAGTACGGCATCCCGGCGCACTACGGGCTGTTGTCGTCGTTGGGAGCCGC
CATGATGGTGGTGGCGCTGCTCTCCGCCAGCTACCACGTCTGTCCCAACAGACTCAACTT
CCAGTTCGACACGGCGTTCATGTACGTGCTGGCGGTGCTGTGCATGGTGAAGATCTACCA
GTCGCGACACCCCGACATCAACGCACGAGCACACGCCACCTTCGGGGTACTCGCTGTCTT
CATCGCACTAGTGGTGTGGGGCGTGCTGGGCGGAGGGCCGCTGTTCTGGAGCGTGTTCAC
AGTGCTGCACGTGTTCACCTTCCTGCTGCTCTCACTGCGCATCTACTACGTCGGACAGTT
CCGACTCGAGAAGGAGAGCCTGGCGGTGGCGGCGCGCGGGCTGCGGAACCGGCCTCTCTA
CACGCCGCGACTCGTCATGCTGCTCATCGCCAATGCGGCTAATTGGAGCTTCGCTATCTA
CGGTCTGCTGACGCAGGCGGGCGACATAGCGACCCACCTGCTGAACGTGCTCCTGTGCAA
CACGCTGCTGTACATCGTGTTCTACGTGCTCATGAAGCTGCTGCACGGCGAGCGCATCCG
CTGGTACGCGTGGTGCTTCCTCGCCGCCGCCGCCGCCTGTTGGACGCCCGCGCTATACTT
CTTTATGTCAGGTAGCACGGACTGGTCAACGACGCCGTCCGAGTCTCGGCACCGCAACCA
CGAGTGTCGAGTACTGCAGTTCTACGACTCCCACGACCTGTGGCACATGCTGTCCGCGGC
GGCGCTCTACTTCACATTCAATCTCATGCTCACCTGGGACGATGGTCTCTCTGCCGTCAA
ACGAACGGATATCGCTGTCTTTTGATATAAATATATTTTCTACCGTTCAAAAAAAAAAAA
AAAAAAAAAAAA
(7392 bp)

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