SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23494c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_lysine-specific_demethylase_6A_isoform_X2_[Bombyx_mori]
Ontology
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0001701 P in utero embryonic development
GO:0001843 P neural tube closure
GO:0003007 P heart morphogenesis
GO:0003016 P respiratory system process
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0007507 P heart development
GO:0010468 P regulation of gene expression
GO:0010628 P positive regulation of gene expression
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0021915 P neural tube development
GO:0031490 F chromatin DNA binding
GO:0032525 P somite rostral/caudal axis specification
GO:0035097 C histone methyltransferase complex
GO:0035264 P multicellular organism growth
GO:0042802 F identical protein binding
GO:0044666 C MLL3/4 complex
GO:0046872 F metal ion binding
GO:0048333 P mesodermal cell differentiation
GO:0048568 P embryonic organ development
GO:0048570 P notochord morphogenesis
GO:0051213 F dioxygenase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0060070 P canonical Wnt signaling pathway
GO:0071557 P histone H3-K27 demethylation
GO:0071558 F histone H3-tri/di-methyl-lysine-27 demethylase activity
GO:0072358 P circulatory system development
Transcript
Level		FPKM:5.16 TPM:5.05
ORF EntryO_TrvaFAMAMG28427_complete:A_TrvaFAMAMG_TR23494c0_g1_i2
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTAATTCATTTTTTTCATTTATTAAAAATTTAATATTATAGTATAAA
CAGTAAGGTCATACATGGCAGTGATGTTTGTTTACTTATAAATATATCGGGCATCTTACA
CACTCTGGCCAACTTTCCGTTCCCAACCCCACTCGGCCCACGACATTACCAATTATTATA
CAGCAACATTGAAATCTCACAACATATCAATAAAACTTCAAGAAACAAACAACAAACATT
AATAGTCGAGGGCCGAGTCAACTGCCAACCCTGAGCTTACTACTATCCAATACACCAATC
CATGAACAAAATTAATATTGACTAATTTCATTACAGTCCAAACATTTCATAAATCAAGTT
AAATAGAATATCAGATCCCAAAACGTCAAACAGATGGTACCATTGGAATTAAAGTGACAT
TATACAACAATTTTCTTTAAGTTACTTACAGCCATAGAACTACCTAAAAAATAAGGTGCA
GAATTTTCAGATACATCTAGTATCATTTGCGTCACTTTAATTCCAAAGTTTCAATGATCA
TAAACGAGACAATGCATGACAATCTCCCGTCCTGTTCCCGCGGCGCAGGGACGCCAAGGG
ACCGCCCAGGGGACGCCCGGGGACCGCCCAGGGGACGCCGGGCGAGGCGCCGTGTGGCGG
TGCTGCTCGGAGTTAGTAATCTTTGGGACATCGCGGCACATCTCATTGGCCCTGCTAAAA
CGCAGAATCTCATACCGTGCAATACACTTACTAACTACTATTCGCCTAAATCTGTCTAGT
AAACTCAAAAGTCACAATACAATAAATAAATATGCCTCTATACAAAACAAACACATTCAC
ATAATGAACACGAAGCGTCCTAAACTCCACGGGCTGGCTCACAATCCACGCTCAATACTA
CTGCGACCGTCTCAACGTTCAAACATCTTTACAATTAATCTAACCGACAATTGACTCTAT
TCTTATTTTAATTCTCACACAATTACAAAAGTGATCGAGGAGCGTAAATTTATATTAAAA
ATTACTTTGTATCACCAAAAATATTATCGATCAACAAATTCTAAATTCACGATTCGTGTA
GCAAAATAGATCGCGATCTTCAGCTACGTAACTATTACAAATATTTTGGTCGAAAAGGCG
AAGCCGGCACCGCCGCGGTCGACCGAGGCGGAGAGCCGGCGGACATAATACTGCATCGGG
CGGCGGGCGGCGCTCAGTCCGGCGGCAACACGGCCAGCGGCGCCGCGTGCGTCGGGGCGT
GCGGCGCCGGCCGGTGCAGCGTGAACGCGTCGTACACCTGCGCCAGCTCGTCCATGTGGT
GCTCCTCCAGGCACAGGAAGCCCTGCAGCGAGGGGCTGGCTCGGCGCGCGCACTGCAGAC
AGTGCACCACGTGGCGCCGCTCGTGTTCCCGCACCAGCAGCGCGTGCCACACCTCGCGCT
CGCACGCGCCGCAGTAGTGCGACGCCTCGCCGCGCGCGCGCCCGTGGAACCGCACCGGCA
TGCCGCGCGCGCGCACCGTCTGCAGCGTGCCCGTCGCCGCGCGCAGCGTCTGCAGCAGGC
ACGTGCGCATGGCGCGGTGCAGCCGGGGGTCCGACACGCGGATGTTGCGCGCCAGGTTCC
ACGTCAGGTGCACCATCGGAACTATCGACTTGAAGTTCTGCACCTTGTTCCACTCGTACC
TCTCGAGGGCGAGCGAGTACTGTCGCGCCGTGAGCGGGCCCACGTTCCACGCGATGTTGT
TGCACCAGCCGGTGGCCTGCACCCAGTGCACACAGCCGGCGTTGACCCACACGAGGTCGC
CGGGACGCTGCGTGAACCGGTACACCGGCACGCCGTGCGCCCGCAGCTCCTCCGGGTCGG
GCCACCACGACCCGTGCAAGTACGAGAGGCCGTGTCGCTCGCACAGTTCCCTCACTCCGC
CCCAGTACGCGTCGGGAACGCCGAACCACTCGCAGTCGCCGGGGCCGATGTTGATGTTGA
TGGAGCAGAAGTTGTTATTCTCCTGATGTCCGGGAGTGCGGCTGCCGGGCACCTTCATGT
AGAGCTGCACGGTGTTCATGCCGAGGATGACGTGTCCGACGTGCGAGAGCATGTTGGCGG
CGGAGGCGACGCGCGCGAAGGCGGGCAGCTTCTGCAGCTCGGCGAGTTGCGCGCGCCACT
TGCGCTCGTCGGAGAGGTCGACGTTGGTCCCGAAGCGCAGCATGCGGGCGGCGCGGCGTC
GCTTGGCGGGCCCCGAGTCGGAGTCGGAGAGCGGCGCGGTGCGCTCCCGCTCCTCGCGCA
GGGAGTCCTGGAAGGAGCCGGCCTGGTACTGCGCGTACTTGCGCACGGTGGTGTGCGAGC
GGTGCGAGACGCAGGCCCACACGCGGCGCCGCCCGCTCGCGTCCCAGTTCTCGTCGGCGG
ACTGCATGAGCTGCGTGCGCACCTCCACCGCGTGCTCGGGCCACGCCTCCACCAGCGTCT
TTGTCGAGAACAGCCCGAGGTCCAGCTTGAGCGCGGAGGTCAGACCCCGCACTACGGCGA
TGGGGTGTTTCAGACAGAAATCTTGCAGCTGTGGTGAGAATGCTTCACGTTTAGACTCGA
CGTAGACGAAGGGCGCGGGCGGCGCGAGCTGCTCGGGGGTGAGGCGCGGCGGCGGGACGG
AGGGCGGCTCGGGGGGCCCGCAGCCGTCGCCGAGGACGGACCACGACGTCGCCGGACCTG
CGTTATCTCTGCAACGCACAAAAAACACGTTAATATTTGGAAACACACAATATTGTCTGT
AACTTCACAGCTGGTATACTCACTTGCAGGCCTCGAGTATTTGTTTAGAGTTCATCCCGA
TGTGGAATGCGACGGGTTTGAGCGGATCCGTCTTGAGTGGTTCTAGTTTGACGACGGGCT
GTCGGCCGCCGAGCACCACCTCATTGCTGCTCGTGGTGCTGCTGTTGGTGTCAGAACTAA
CTGGTTCTTTTTTGATCTCGGGTTGTGTGTCCGAGAACTTTTTCAATAAATCTTCGGCGA
GCGACTCTGTACTGTCGCTCCCGGTGTTACCGCTACTTTCTTGTTTCGCCACCATTTCGG
GGATCTTCGGACCCACGATGGGCCTACTCGGCCACAGCGGCCCGCGTAGTGAAGAGCGGA
GACGTGGACAGCGGGAACAGTTACAAGCACACGGTCACTTAAGATGATTCTGTAGAAGCA
CTCGAAACAAAATACGATCACACACGTCCCGTCCTACACTACGTACACGGCCCGTGCCGA
TGCAGTTTACGTCACCGCATCCCGCTCCAGACTGACGGTACGCGGACCGAGCGAGCGACG
ACCTCGCGCTGCAGCG
(3316 bp)

- SilkBase 1999-2023 -