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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23450c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_LOW_QUALITY_PROTEIN:_atrophin-1_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0001104 F transcription coregulator activity
GO:0003684 F damaged DNA binding
GO:0003690 F double-stranded DNA binding
GO:0004844 F uracil DNA N-glycosylase activity
GO:0005080 F protein kinase C binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005886 C plasma membrane
GO:0006281 P DNA repair
GO:0006284 P base-excision repair
GO:0006285 P base-excision repair, AP site formation
GO:0006298 P mismatch repair
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006974 P cellular response to DNA damage stimulus
GO:0008152 P metabolic process
GO:0008263 F pyrimidine-specific mismatch base pair DNA N-glycosylase activity
GO:0009790 P embryo development
GO:0016568 P chromatin organization
GO:0016605 C PML body
GO:0016787 F hydrolase activity
GO:0016798 F hydrolase activity, acting on glycosyl bonds
GO:0016799 F hydrolase activity, hydrolyzing N-glycosyl compounds
GO:0016925 P protein sumoylation
GO:0019104 F DNA N-glycosylase activity
GO:0030983 F mismatched DNA binding
GO:0032091 P negative regulation of protein binding
GO:0032183 F SUMO binding
GO:0035511 P oxidative DNA demethylation
GO:0035562 P negative regulation of chromatin binding
GO:0040029 P regulation of gene expression, epigenetic
GO:0042803 F protein homodimerization activity
GO:0043566 F DNA binding
GO:0045008 P depyrimidination
GO:0080111 P DNA demethylation
Transcript
Level		FPKM:1.14 TPM:1.12
ORF EntryO_TrvaFAMAMG27754_5prime_partial:A_TrvaFAMAMG_TR23450c0_g1_i2
Sequence
(Nucleotide)
CGCGAGTCATGATCTCGCGCGCTATTATTGGTCGCCACAGGTATTTGTCTAGTGGTGCCA
TCTATAGGAGATATTTGACAGCCTCGGAAGAGTGGATACACAGTACTGTTTATTCCCAAT
ACGCAGCAGAATCATGTCAATAACAATGCAATTTATGGCGAAATAAAAATTTGTATAAAA
CATTGTACTTCCATGAATGATAATACCAACATAAAAATATTACGCAACACGAAAGTTCAA
TGACCGCGCCGACAAAATGGCCGCTCCGTTGCGACAGCGTATAAAATACAATAAAAAAAA
TGCTCACTATATATAGCGTCACAAAACGTGTTTAAACTAACAAAAAATCTACAAAAAAGT
ATACAATTTATATTTCATAGGCCGTTCTTGTGACTTAGATGAAAATATATGTTTTTATAT
ATGTAATATAACTAATATACGTGTGATTGTGTTCGGGAGTGCCGGAGCGTCGTGTACGTT
ATCAATTTGACTAGCCGACACAAATCAGAAAGTGACTAGAGCGAAACACATCATTGGCAA
GACTCGTATTTATTAAAATTTTTGGCGAAACTCCAAAGAAACCACCGCTACATCATCGCG
AACCCACGCTAAGATCATCGACCATCGAAATCTGAAATAGAATCACTCATTTCGATTATA
TTCGCGAGATCAACCTATCAAAACATTTTCCGAACACATTATTTCATTATGGCAATCCAA
AATGGCCATAAATAATTTTAGTAGGCATTGCCGGAGATCACAGACGTTCCGAATATTATA
ATTAAGTACTCAACGTCGCTACCGACACTCCCAAATAAACCGCACCTTAAATAGTAAAAA
TTAAACGACATTTAAAAATACGATCTCTGTTATTATGTCAAAATATTACCCTAATAAATG
TAGTAACACAAGTCTTAATTAAAGACATCTAATATTTCATTTTATTGTTACAATATCGAT
GTACGAAGTCAACAATATTTTCACATACAAACGAGAGACATCTCGAAATAAAATCGCGAA
CAAAACTTGTGATGCAGCTAGCGATTAGTTAATAAAAAAAACACGTGTGATGGACCGAAA
CAAAAATACATACAATATTTACAAATAAACCACCTATAAATTAAGCTCATCAATTTGAAA
AAGATTAAATTACATCACTAACGATTGCTTTACAAAAACTGTTTTTAATTCGATAAAAAA
CCGCAATTCGAATCGATACATCAGTCCAATTTCGCTACTTAAACTAATATCGAGACCGCG
CTCGGCTCCGCGCGCTTGAATACCGAACGAACACCGGTGTCGTCATCGGCGACCAATCAC
AGAACAGTTTATAGTACCGACGCACCAATGAACGCGCGGGGCAGTGAGATTCACGTCCAC
AGAGTAAGGATGGTGTAGATAGTGTCGTGTAGTCGTACCTCGTCAGTTCTATGTACAGAG
CGGGCACTAACAGAAGCCCCCGAAGCCCACGGAGGGCACAGAGGGCACGGCGGGCACACC
TGCTGAGTGCTCGCCGTTTTTGTGGAGATCGATCAGCTGCGGCGCTGATAAATAGTGTGC
CTGCTGGTGGTGCGCGGGCGGCGGGCCGTAGTAGGGCGCGTTGTACGGGTACGCGGGCGC
CGAGTACGGGTACTGCCACTCGGAGAGGTAGCCCGGCGCGGGACGCATCACCGCCGCTCC
CCAGCCGCCGCCGTAACCCACGAACGGACCGCCGTACCCATTATTCCCATACGCAGCGCT
TCCGTAAGCTCCATAAGGACCATACAGAGCAGGCGCGTACTCAGGTAATGTAGGCACAGG
GGCGGGTGCAGGTTGTTCAGTACCCCCCACAGTCCCGGGGGGCCCACCGCCCGCGCCGGC
CACGCCTGCAGCCGCCCCTGGACCCTCCGCTATTGACGGGATCTGGTCCACTAGGGACTC
TAGTCCAGAGAGGGATTTGGAGGCTACGTCTTGAGATTTCGGTTTTACAGTCCCGCTGTA
ATCGCTTGGTGAACCCGGTTGATGATGTAACGGCGTATGTGGCGTGTGTGGCGTGTGCGG
CGTGTGTGGCGTGTGAGGGTGTTCCGGAGGCCTGAACGCCGCGCCCGCTAACGGTGAAAA
CGAACCCTCACCGCTGGGCGGCGTTGATCTGTTGAAATTGCTTTGATATAACGACTGGTG
TTGGTGCATCTGGTCTAACCGAGGACTTTCGGAAACTCCGCTTCCTTGCTCCTGGTAGTG
GTAGTGGTCCTGTTTGTCCTGCGACGCGGGGCTGTGCGTCATGGCGTGTCCGTACTGGAG
CCTCTGCTCGCCGTCGTAGAGCGCGCCGCCGTACGCAGCGGAACTGACCGCCGCAGGAGA
CATATCGCTGCCCGCTGACGGCTTATTATAATCCGTGAGCGAATCATCGCTGTGTTCGGG
CGGCGGGCTAGCGGCCGGCGGCTCGAAGTCCAACGCCGCCATTCCGGGGGAGACGGGGCC
GGGGGACGAGATGGCGGCGCCTATCTCGCTGGACAACTCGCCTCCGAACGCACCGCTCCC
ACTTGAACCGCCACTTTGGTGCGCGAAATGATGCGAGTCTGTATAGGTCGGCGTCCTGGA
CGGCGGCGCCGGCGACGAGTGGTGGCTGTAGGGCGTGTGCGCCGGCGAGGGCGTGTAGCC
GCCCGCCGGGGACGCCGCCGGGAACGGAGTGGTCCCGCCGACTGTGCCCGACGGCGCCGG
CGACCGGGAGTACGGACGGGTGCCGTTCTGCGGCACTGGGGACCGCGAATACGGTAATGG
ATGGTGCGGGTGCGGTGATTGCGAGAAACGTGACTGTGGTACTGGACTTGGTTGCTGTCC
CTGATGCGGCAAGTAAGGTTGGTGCGCCGGGCTGTGCGCATACAGCGGCGAGCGCGCGGC
GAAGGCGGCGCGGGAGGCGGGCGAGTAGCCGCCGGGCGACCCGGGGAACACCGACCCGCC
TTCACTGTAGCCTTGCGACTGTGAGACCGGTGATGCGTAAACAGCTCTGGGCGAGGCGCA
GTACCCAGCTCCAGAGTTGTTACCCGGGGACGAGTACCCCCGACTCATGCCTGCTAATGT
GCCCGTCACGTCCAGTGGGGAATCCATACCGGAAGCCGGCTGCGCTTGCTGCCCCTGCGG
CTGGAAGTACCCCGTCGCGTTATCAGCTATCTGCTGCTGATACAGCTGCGACATCTGCTG
CGGGAAGTCGCTCATCGAGTACTGGTCGTGCGGTAACGACTGCATCGACGGCAGCGGCGT
CTGCAGCAACTGCGACGCGCTCGATTGCTGCGTACAAACATTACCGTGTATAGTTTGCTC
TTCCTGCTGCTGTTGTTGTTGTTGCAACAGAAACTGTTGTTCCTCCGGCCTGATCTTCTT
AGGCCTTCCTCTCTTTTTCTTTGGAGGCTGTTCCCCATTAGGATCCAACACTGGCGCAGG
CCTGGGCTGTCGTGGAGCCCTAGGTATAGGGGGAGCAGTTTCACCATTTTCTAACTTCAC
TTTTTTAGGACGACCTCGTTTCTTCTTTAAAGGTACTTCGGTACCGTCTTCTAATATTAT
TGTGTCTCCCGGTTCGGGTTCCATTGTTAATCTGCGTATCTCCAGTTCTTCCTGCGGCCG
GCGGCTGGTCGTGTCCGGGAACACGAGCTCCGACTCGTCGATGTGAGCTATTAGACCGTT
GAGGTAGTCCCGGAACTTCTTGAGGGCCGCGTAGAACGGTACTTTGTCTGCCGCTCGGGG
GAGCTGAGCGCACCGGGCTGACGATGACGGCATTACCCACATGTAAGTGTTAGTCCCGGC
TATGGTATCGGGCTGTTTTCCGAAGCAGAAGTCCTTCTTCCCGGAGAACACCTCGTAGAT
CAGTTTCCCGTTGAACACAGCCACTTTCGGTCTGAACGTCTGTAGTTTCTCGAGCAGGAC
AGCGGAACCCTCCTTTATTTCGCGTCGGGTTAAGTCCGCTGAACCTTTCGTGGGTCTCGG
CACCATATTCGTGAATCCGATACCAAAGTTTAGTAGCTTATAATCTTCATCAGCGCTCAT
TTGTTCCCTCGTCAGTCCTGAGAGGTACAGACACTTCCAGAAATGGTTTCCGGGGCCTGC
GTAATGGTGGCCCTTGTACGCCGCAAATAAACCGGGGTTTATGCCAATAATGATGATATC
CAGGTTCTCGGCGAGATGGTCCGGCAGAGTTCTTCTGGAGACCTCCTCTTCGCTCATACC
GTTGAAACGATCGTGCTTCTTGCGTTCCTTCACTGGTCTGGGTATTAAGCCGTCCATTCC
TGGTTCCACTTTGATCTCCATGCCATTCTCATCTTTGATTTTCTTCTTCCTCCCCCTTTT
CTTGGGCTGGTTGAGCAACATCTGCTGAGGGTGCATCATGTGGGGATGATGATCGGGATG
CATTTGCTGTAAGTGGTGCTGCGGTTGTTGAAGCATAGCGCACATTGTCTCCTCTTCAAC
GAACGAGTAGGGGTCCTCGCATTCTCTTTTGATGCCATTATAAATATCGTCGTCTCGTTT
CTGCGGTGGCGCATACTGAGGATGGGGTTGATGCGGCTGGTGCTGATGAGCTTGATGGTG
CTGACTCATGTCGTAGGGCATGTCTTCGCGTTTGAAGGAATACGGCTCGTTGTACTTGGG
GAACGGGAAGTACTGCGGCTCCGGTTGAGCGAGAGGGGGCGCTGGTTGCTCGAAGTGTCT
GTAGGGTTCCGGTTCTGGCTGCGGGTACCGCATCATGGGCTCGTAGGGCGGGTCGGGCGG
CGGTGACGGTTCCGGCGGCGGCGCGGGCGAACCCTCCGCGCTGGAGGGCTTCCGGCGCGC
CGCCTCGCCGCTGTTACTCGTCTCGTACCCGTCGTCCTGGCTCTCAGGCGGCTTGGGCTT
ATCATCGCCCTCCTCCCTGATCATTGAAGCTGACTGCTGCTCGCATTTACTGCTCGTCTC
CG
(4922 bp)

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