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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23446c2_g4_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_zinc_finger_protein_on_ecdysone_puffs-like_[Amyelois_transitella]
Ontology
GO:0000398 P mRNA splicing, via spliceosome
GO:0003677 F DNA binding
GO:0003697 F single-stranded DNA binding
GO:0003727 F single-stranded RNA binding
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005703 C polytene chromosome puff
GO:0005875 C microtubule associated complex
GO:0019233 P sensory perception of pain
GO:0046872 F metal ion binding
GO:0048024 P regulation of mRNA splicing, via spliceosome
GO:0071011 C precatalytic spliceosome
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:9.07 TPM:8.89
ORF EntryO_TrvaFAMAMG27615_complete:A_TrvaFAMAMG_TR23446c2_g4_i3
Sequence
(Nucleotide)
GGATCTTATAGAGGAAGTAGTAATAGCGGCATCGTCAATCTGTGGTTTCAATTTAGCGAA
TAGTACCACAAATAGTACAGTAAAATATCTTCTGTGCTGTGCGGTGAAATCTAGTAGAAG
TTGGGCTTTATCTCAATCCCAAGAATATGTCATCAAGAGGCAGGGGGTATGGAAGAGGAA
GTTACAGTGGGGGTAGGGGAGGCGGTTACAGAGGATCTTATAGAGGAAGTAGTAACAGAG
GCTCTTACGAAAGCCGTGGAGGTCGTGGTGGTGGCAGTTATTCTTCATACAATAATGAAA
CCCGTTATAATAGTGGTGGAAGAAACTACAACAATAGTCGTGACAGAATAGAAGAACCAT
ATAAAAAATCATACCGGAATGAGAGCTCTCTTAATTATTCAAACAGAGAATACGGAGGTA
GAGGAGTATCACCAGAAAGAAAAAGAATGAGGATGGAGGCATCAACTGAAAGACGTAGCC
ATGACGGGGGCGGCGGTCATTATGGCGCTTACAGTTCAAGAGCTGAAAATTACGGAGTGG
AAAGAAGGTCTTTTGTCGGCGAAGAAAGGAGACGGTCGCCCGCCAGAGAGTACCGCAAAC
CGAGCGACATGGGCCCTCCGCGCGAGGCGCGCTCCGGCGCCACCCGGCCGCGCCGCTCCT
TCCGCGGCCGTGCTCTGCGCTCGCGAGCCCTCTACCGCGGCGCACCCCGTTCTCGCGCTT
CCTTTACTAGGCGCTTCGCCGACAGAACAATCAATTACAACAGAGCCTTTAGAAGCGTCA
AAGGGCGCAGTTCCATTAAATCCAAAGAAGAAGCTTCTTCAACTGAGGAAGACTGGGATG
CCGAAGAAGACAAGGAGCCAGTAACTGAAGAAAAAAAAGAACAGAAAACTAAATCACCAA
AGGTAGAAGCTGAGGATTCTGACGCTGAAGCAGCAGTTACCGCGGGCGTTGACGACACCG
ATAAAGAACCCGATACTACTTCTGACACCGCAACACGATCCTTTGTGAATCTTGTATGCG
TACATTGTAAAAAAAAATGTGGCAGTTTTGGGAGGTACGCGAAACACTTGGTGTCAGTGC
GGCACCGCGCGGCGATGAGCGTGGTGGCGCGGCGTCACAAGTCGCAGTTGTTGCGCATGC
GCGTGGCGCAGCGAGCCGCCCAGCGCGAGCTCGAGGCGACGTCGGGCGCCGACCTCGCCG
AGCGCACCACCTTCTGTCCCGTGTGCCGGCTCAACCACCGCACCACGCGCGAGGCGCACA
ACCTCAGCGATACTCATCGAACTATGAAACGTTTCCTGATGCCCTTCTGTCGTGTCTGCC
GCATAACCTATCGCTCTCCGATGATATATGAACATCATATCTGTTCCATTGAACACATCA
AGAAGAAAGCTAATAAGGCATCGCTTCGCGCTAGTCCGAAGGCAGAAGGCAGTGGAGATG
AAGGCATGGATGTTGATTTGGATAACTTCATGACTCTTGATTCTGTGGGTGATGTTGATG
AAGTCGAAGATGGTGATTCTGGCGCAGAGAAAAAAGACGAAGCTAGCCCAAAAAAACCAA
AGGTTGAGATAAACATTGGAAGTGAACATATTAAAAAGCTGGAGGTGTGGTGGTGCGAGC
TGTGCCGCACGTACCTCACGCGCGCCGAAACGGGCGGCGCCGAGCTCACGGAGGTGGTGC
GGCGCCACTGTCGCCTGCGCATGCACCTCGGCCGCTACGTGCAGTACCGCGACACGCGCA
CGCTGCGCAAGCACGCCGAGCGGATACACCGCCAGCTGCACCAACAGAAACAAGACACAG
AAGAATCCGCAACCAATAATGAAAAAGCTGTCAAGGTGGAGAAAAACGAATCTGTTGATG
AAACCAAGACTAAATTGGAAAATGGAGCTGAAGTTTCTAACTCATCCGCTAATGAAGATA
AATTGTGGGCTGACGTTGATAAAGATATTGGTGAGCTTCTCCGGGAAGTAGATCCACAAG
GAAACGAAGGAACTGATGATGAGGAAGATCTTGATAGATATGAAAAATATCGCAAAACTG
ATACTAAGAAGCCAAAGGAAAGCGATGTTGCTGAAAACGATACAAACACAACTGGAGAGA
AAAAATCGATTGAAGTTAATACATCTGCTTAGTCATTTGCTAAAAATTAAAACTAAGTAA
TTATAATATTATTGTTTTCTGCATATATCTATCATAATCTATTATCAATGACAAAGGTCA
AATAAATTTGAAAATCCTTAAATTTAATTTTACTATTTCATACCATCTATCTATCTTGGT
TATTGGGGTGGTGCCTGTAATCACCTGACACTTCGACCCAATCGGATCTTTTGTATCACG
ACCCCTTCCTTTATTCCTCGGCTT
(2364 bp)

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