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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23295c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		Transposon_Ty3-G_Gag-Pol_polyprotein_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000943 C retrotransposon nucleocapsid
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003723 F RNA binding
GO:0003824 F catalytic activity
GO:0003887 F DNA-directed DNA polymerase activity
GO:0003964 F RNA-directed DNA polymerase activity
GO:0004190 F aspartic-type endopeptidase activity
GO:0004518 F nuclease activity
GO:0004519 F endonuclease activity
GO:0004523 F RNA-DNA hybrid ribonuclease activity
GO:0004540 F ribonuclease activity
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0006278 P RNA-dependent DNA biosynthetic process
GO:0006310 P DNA recombination
GO:0006508 P proteolysis
GO:0008152 P metabolic process
GO:0008233 F peptidase activity
GO:0008270 F zinc ion binding
GO:0015074 P DNA integration
GO:0016740 F transferase activity
GO:0016779 F nucleotidyltransferase activity
GO:0016787 F hydrolase activity
GO:0019076 P viral release from host cell
GO:0032197 P transposition, RNA-mediated
GO:0046872 F metal ion binding
GO:0071897 P DNA biosynthetic process
GO:0090305 P nucleic acid phosphodiester bond hydrolysis
GO:0090501 P RNA phosphodiester bond hydrolysis
GO:0090502 P RNA phosphodiester bond hydrolysis, endonucleolytic
Transcript
Level		FPKM:11.78 TPM:11.54
ORF EntryO_TrvaFAMAMG27261_complete:A_TrvaFAMAMG_TR23295c0_g1_i1
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTTTTTTTTCTACCTTTTTATTTTTTAAACAATTAATAAATAAATT
GTTTCGTACACATAAAAATCGCACTGGGCCGACTATTTCAGGAAACTACAATTCCACGAG
CAGAAAGAGTGCTGGCACCATGTGTGGCAGACCAAGGATGTACTACGAGTGCTGAGATAA
GCCGTGCAACGCTCGCGGCCGTGGCAGAGACTCCTCACCAGGAGCGTACCATGAGTGCAG
AGCTGCGCCGTGCAACGCCCGCGATGGCAGCAGAGACTTCCCATCATGAACGACAAGAGA
CTACAAGTAACCCTAGTTTATTACTTAGTATCAACGATATCTCGCAGTTAATTCAGAGTT
TCACGCGTGCGAATTCTCATATACCCTATGACAAAAACATGATTCCAACATTTGACCCAT
CACAGAAAAATCAGCGTGTTGAAAGCTGGATAGCCAAGGTTAACGAATGCGCAAAAATTT
ACAAATGGTCCGATGATCAGACTGCTCATTACGCGTTGCCCAAGTTGAGTGGTCATGCTA
AAAAATGGTACGAAGGTCTTCAAACTATACTTCTTACGTGGACCGAATGGCAGGATCGCT
TAATGAAGGCATTTCCGTCGGAAAGTAATTACGGGGCTTTGTTATCAGCTATGCTAGAAC
GACGTATGAAATTTAGTGAATCAGTTGACGAATACTACTACGATAAAATGTTATGTCTTA
GTGCATGTGCCATATCCGGTAAGAAAGCTGTAGATTGTCTTATTTACGGGATAGAAGATA
GGACTATTAGGGCAAGTGCGTCTTCGGCGAGGTGTCAGGATCCGGAAGATTTACTGAAAT
TTCTCAAAGATTTATGTAGGGAAAGTATTAATCATACTCGTTTTGTTGAGCGAACTACAT
CTAATAGAACTTATAACACATCTAATGATCTCATGAAATGCTTTAAGTGCAATAAAATGG
GTCATCGGGCTGCTCAATGCCGCAATAAAGCTACGACCGAAGTTTCATGTTTTAATTGCA
AAGAAGTTGGCCACACGTCCAATAAATGCTTGAAACCAAAGATTAGGTGTGACAACTGTC
AACGATTTGGTCATAAAACTAACGAATGTTATAGGGCTAAAGATAGTAGCCAATCTAATG
GTATACTCAAATCCGATAAAAAGATATTACTGACACAAAAATCTCGTTCCGATTCGAAAT
TTTATAAACCCGTGACTATAAATGGTGAAATAAATTTACAATGTTATGTAGATTTTGGAA
GTGATTGTACACTAATCCGTCAAGACATAGTTGACAGATATTCTTTACCTAAAATAGACA
GTGACACACCACATATCCGCGGATTTGGCAATGGTTTGACGGTTCCTTACGGTAGGACGA
AGTTAAATCTCTGTATCGGGGAGGTTACGGCAGATATAGAAGCTTATATCATTGAATCCT
CCTTGTTAAGTGAATCCTTGTTAGTTGGTCAAGATTTCACCGAAAGGCCCGATGTAATGG
TGATAAAGACACATGATAAATTAGAAATTCTTAAAAGATCGATAAACGATGACTTGTCAA
CCATAAACGTCAATTATAAAAATAATGACAAACTAGTTCTGAGACTAAAAGTAGACACTG
TTGTGAACCAATTTGGTTATGTAGATTGTATAGATGATGAAAATTCTAGTTGTGATGTTC
TGATAGAAGATAGTATAAGACGGTTAGATAACGTGAACTACTGCGTGGTAGGCGGCGTTT
ATAGTATTGATCAAGGCGAATGCCAAGTAGCAATCTATAATGATTCAGAAAAACCAATTT
ACTTTGAAAATAACACTGTGTTGTCTCGCTGTAAACGAATTGTTTCGTTAGATTCTACCA
CAGATCAACCTGGACTGACATGCCGTCATATCAACAATACCGCTTTAACAAAATTTACCT
TAGACAAAGTTAATGTCAACCCCAAACTGTCACAACGACAACAACAAGACATCCTTAGAC
TAATCAATACATATAGAGATTGTTTTGCACAAAATTTAACTGAATTAGGATGCACAGATA
TAGCTGAAATGAATATAGAGCTAGACGATACTACACCTGTAGTATATAGACCTTACCGTT
TAAGCCACACTGAAAGAGAGAAAGTTCGGGAGATGGTCAAAGATCTTGTTGACAATGATA
TAGCGGAAGAATCAAATTCTTCCTATGCAAGTCCTATCATACTTGTAAAGAAAAAGACGG
GTGGTCATCGTTTATGCGTAGACTTCAGAGCTCTAAACCGAAAAACTAAGAAAGATCATT
TTCCAATGCCTAGAATAGACGACCAACTAGATATGCTTAATGGAAACAGGTATTATACCT
CTCTTGATTTGGCTAGCGGCTATTATCAGATACCAATAAATGAAGCCAGCAAACACCTCA
CTGCTTTTGTTACTCCGGATGGTCTCTATCAGTTCAAGAAAATGCCGTTTGGACTGGTTA
ATTCGCCAGCGGTGTTCCAACGGATAATCAACCAAGTGCTGGGGAACACTAGGTTTCATT
CCGCGCTCGCCTATATGGATGATATTCTTATACCTGGTAAAGATTTTAACGAAGAATTTG
AACGACTAGAAAATACGTTTAAATTATTGCGAAGAGCTAAATTGACACTAAACTTACAAA
AGTGTAATTTCTTTCAAAATCAACTTGAATATCTTGGTTATGAAATAAGTGAGCACGGAA
TAAGACCTGGAAAGGCAAAAATCGAGGCAGTAGAGCATTTTCCAACACCACGCAATGTAC
ATGAGGTTAGGCAGTTTATCGGGCTAGCCAGCTATTTTAGAAAATTCATACAAAATTTTG
CGAGCATTGCGAAACCGCTTACCGATTTAACCAAGCAAGGCATAGCGTGGTCTTGGAATG
CGGAACAACAAGAATCGTTTACTAAACTAAAACAATCATTGATACAAAGACCTGTATTAG
GAATATATGATCCCAAAAGTGAAACATACGTACACACAGACGCTAGTAAATATGGTTTAG
GTGGAATTTTGCTTCAAAAGGATCCTAAAGCGGTGCATATGAAACCGATAGCTTATTTTA
GTCGAAAAACATCCTCAGACGAGCAAAATTATCACTCATATGAGTTAGAAACGTTAGCTT
GCGTGATCACGCTTCAACGATTTCGGGTTTATTTGCTAGGGATAAGATTTACCTTAATTA
CAGACTGCTCTGCTTTGAGAGCTACATTTAGTAAGCGTGACTTGATACCTCGAGTAGCTC
GTTGGTGGATAGCTATGCAAGAATTCGACTTTGATATTCAATACAAACCAGGACATACCA
TGACACACGTAGACGCCTTAAGTAGGAACCCTTTATCTCCTAAGTCGGATACGATGATCG
ACATGATTCCGACCATACTAAAAATAACTCAAGAGGACTGGTTAGTTGCATTACAATTAC
AAGACTCCGAATTACAACGGATTAGAAAAATTTTAGAGAACACAGATTATTCCGAGATAA
AGAAAAATTACACACTTAAAAATAATAAACTATTTCGGAAAGTAGGAGAAGAGATTAAGT
GGGTTGTGCCTAAATCAGCACGATTCCAATTGTGTAAATTAAATCACGATGACATCGGTC
ATTTCGGTGTTCATAAGACTATCGATAAGATCGGTAAAGATTTTTGGTTTCCGAAGATGA
AACGATTCATTACAAAATATGTACGTTCCTGTTTGGAATGTGCGTATAGCAAGGAACCAG
CAGGGCCTAAAGAAGGGCTTCTACATCCGATTCACAAAGTTGATAAGCCCTTCGATACTG
TACATATTGACCACTTAGGACCTTTTGTAAAAAGTACTAAAGGAAATTCATATCTTCTTG
TATTAGTAGACGCCTTTACAAAATTTTGCATACTAACACCATTACGGAACCTTAAATCTT
TGCCGACTATCCGAGCTCTTGAAAATACATTCTGTACGTTTAGTTATCCGAATAGATTAA
TATCTGATCAGGGGTCATCTTTCACGTCCTACGAATTTAAAAACTTTTGTAACGAGTCAA
AAATTAAACACCTCCTCAACGCTGTTGCTTCTCCTCGTGCCAACGGGCAAGTGGAAAGGT
ACAATCGAACAGTGTTGGATGCACTTACTGCTTATTCTAATAAACTTGGTGAAAAATATT
GGGATCGAGAATTAGGAAAATTGCAATGGGGTATGAATAATACTATAAATAAAGGAATAG
GGAAAACTCCATCGGAAGCACTTTTTGCAATCCCAATGGTTAGTCAAGGTGATAATATAT
TCAACTCAATTTTAAATGAAACCCGTCAAATAGGTGATGTAGAAGAAATCAGAAGTGATA
TTAGTAAACATATACAAAAAGATCAGGAGGCACAAAAAGCTAGATATGATAAAAGGAAAA
TTAGGGCTAAATTATACAAAATAGGTGATTTAGTGAAAATTTTAAAACCTATTCCGAATA
ATGATGGTAAAAGTAAAAAGCTACTACCGAAATTTACCGGGCCCTTTAGAATTACTCGGG
TTTTAGAAAATGATAGGTATGAAGTATCGAGTATACCCGGGACTAAAATAACACCAAAAG
CCTATAGTAACATATGGGCAGCTGATCGCATTAAACCTTGGATATCCACTGGCAACAACG
ATAAAAATGATGATGTTAATGAGAGTAGTTCTAGTGGTGAGTCAGATTCACAGTAGTTTC
GTCGACATTATGATGACAAGTGATGTCATTAAAGAGATAAATTAAAATGATGATTTTTGG
ATGATTATAAATTAGAATAAATGTTGAATTACATTATAAGGGCATTAAAATAAGTTCTGA
GTTAGTAATTTTAGATTGACTAGAAAATGATGCATCGGTTATAAGTTACTGTAGCTACAT
ATTGACACTGAGTTTGTTTGTCCTTTAGTAAGTTAATGATTTATGTGTATGTGTAACAGT
TTTGAATGAAAATATAATAGTAAGCAATATAATAGTATATAATTGGTGCAATAATGTATT
ATTGTATAACGAGAAGTTCAGAAAAGTTTCTGAAGATAACGTAATGCAATAATACAATAT
AATGATGTATAATGTAATGAAAAGAAATGGAATTGCATAACGATTGTAATGTTAGAAGAG
TGGCCTGGTTAAATACTCGATTTTGATCAATCGGTATTTAACTAAGTGCGCGATTGAAGA
TATTGAGTTACCGTGTTGATAGATCCATGGGTATCTTCAATCGAATTATCCAAATTACGG
AGTGTACAAGAGGGCTGGCAGGATATATGATTTTGATAGATCAATCAATATTCTATTGGC
CAAAAATGTTGAAAATATTTGGTACCGTGTTGATAGATCCACGGGTATTTTCAATATTGT
AGTATTGACAATTAGAGAATGTTAAAAGAGGCGTGTAATATATATGATTTTGATGGATCA
ATCAATATTTTACGTGCTATAAGGTTGAAAGTATTGGGTACCGTGTTGATAGATCCACG
(5459 bp)

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