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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23201c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_splicing_factor_1_isoform_X2_[Papilio_machaon]
Ontology
GO:0000245 P spliceosomal complex assembly
GO:0000389 P mRNA 3'-splice site recognition
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005840 C ribosome
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006397 P mRNA processing
GO:0008270 F zinc ion binding
GO:0008380 P RNA splicing
GO:0030238 P male sex determination
GO:0033327 P Leydig cell differentiation
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0046872 F metal ion binding
GO:0048662 P negative regulation of smooth muscle cell proliferation
GO:0050810 P regulation of steroid biosynthetic process
GO:1903507 P negative regulation of nucleic acid-templated transcription
Transcript
Level		FPKM:7.73 TPM:7.58
ORF EntryO_TrvaFAMAMG26838_3prime_partial:A_TrvaFAMAMG_TR23201c0_g1_i1
Sequence
(Nucleotide)
CGGGGCGGCGGGTGCGGCGCGCGGGGCGGCGCCGGGCCCGCCTCGCCTAGCTCTGCCATT
AGCGACATGTACTCCTCGTCGATCTTAGCCTTGTCAGGCTGATGGTGTCCCGGGCGGCGG
GCGCGGCAGTCCCGTGCGATGTGTCCGGCGCCGCCGCAGGAGGAGCAGACGATGGCGGAG
GTGACGTTGGGTTTGTCGGGACAGAGCCAGGTCTTGTGGTCGGTGGCGGAACAGTTGGCG
CAGCGCGCGGCGTCGTGTTCCCGGAGAGTGCCGTTGAGTTGTGCGAGCTCGCGGAGCTGC
ATGCGGCGGAGGTCGTTCTGTCCCTCGGGCACTTCCACGCCTTGGCGGATCACCTCTTTT
ATCTTTTCAACAGCCTTCTTAACACAGTCCGCGTTAGTAGCGGTGATGTATGCGTGTAGC
GGCTCGTCCTCCCCGGGGAGAGGTTGTCCATCCTTGCGGCCCACCTTGCCTTCCTTCACG
GAGCCCTTACCGCGGATTATTATCTTGGCACCGGTCTCTTTCTCCATTGCTTTAAGTGTA
TTTCCCCTGGGTCCAATGAGAAGTCCCACGAAGTTGATATCAGGGTGCTCCTCTTGAGGG
ATCATCACTTTGTCATGTACTCGTATTATTGGAGGCTTATAATCAGGCGGCGGTTTGAAC
TCCGGGTTGACCTGCTGCATCCTCTGCACCAGCCTGTGTCTCTCTTCCTCCAGCTTCCTC
CGGGTGCGGTACTCGCGCGTGTTCAGCCGCTTGCCGTCCGTCGAGTATATGGGCTCCGGA
GACGGCGATCTGATGTGTTGAGGTGGTTAGGCGGTGGTAGGTCAGGTGTAATGTTACCAT
CTATTGCAGTTGTCAATTTTTTATACTTTTGCATTTTTTACTTAATTTTAATGTGACATT
TTGACTTTTAATGTATCTTAATCCAGTTTAGAGATGTAAATCTTGATTGTTAGACATGTT
TTTTGTCAATATAGATTATTATTTGACGAGTTCCCGTGATATTATAGATTGATTTCTTAT
TAGACGAGACAGTGCGATTTTTTTTAACATTGCTTAGAACCACTTTTATTTTTAGAATCA
GTTAAACTTTTATCCAGCGTTATTTGATGTATTATCATCGCTGACTTAAGTTTTTTTATG
TTATGTAACACTGTGTTTTTATATTTAAATTAGTGATGTCAAACCAGTAGTTTTAATGTC
TATAAAATTTTTTCGTCGGCCCAGTTTTATGAACTGTGGACCCCATTTGTTTTACGACGC
CATGAATCTCTAATTGACCTATAAATTACCTTTTACTATAGTTAATTTTAAACGGATTAG
ATTTTGAAAAACCTTTACAGCAATGCATTTGATATCAAATTTTTTTCAGTAACCATTTTT
AATAAATTACTGCAATAGATGATAAACAATACACCTTCATTGTAAATTTTGAGAGGAATT
ACAATCTAGAGTCATAATAATGTGTTTTCACTTTTATTATCAATTTACTTGATTTAAAAA
ATAAAAATTTGAAAACACATCGTTATTAGATATTGTCATTATCAATAAATATTGACAATA
TCGTCCTATTCTAAGCCTAATCGAAGCCCTATAGCCCTGAGAAATAAAAATTATTATTAT
TTTCGTCTCCTGAAATTTTGATTAGAAAAATAATATTAGCACATTTGTACCCTGAAAATA
GAGATTTATTATGTGCTGAAAAAAGGATTATTATTTTAATTATTGTGTTTATTAATTATT
ATTTATTAGAAACGTGTCTGTAGTGCGTATTACCTGCAAAATTAAGAAAAATTTCGCATT
AGTAGTTTGGATTAAATTTTTCTTTAGTTTTTCTTTTTTTTTTTTCAACAAAATTTTAAT
ATGAATTTTTCAAGGGCGTTTATAAAATGAAAATCAATTAAAACTGTGCATTTTAAAATC
ACTTCATCAATTACGTGTGTCGATTTATCATCGGTCGTCCTGTAAACAGAATAATAATTA
AAAATGTAATAATTGACGATAAAATATTAATATTATCGATTTCAATACATTTTCATTACA
TTCTGTTTCAAGATCAGGTTTACTGTAAATGAAAAATAAAATTAAGTAGTAAATAAATAT
GAGGGCTTTTGACAGGTTTTCTTTCAATAAAAAAACAGAAAAGAAATTGGGATTCTATTT
CCATTCCTCATTAAATTCCGATCTATTTTAACTTATCATAGCAGAAAATTAACAACTTAA
AACCAATCCGCTCAATTGGGACGCGACCCAAAAATTTCTTTGACTATTTATATTTGAGCC
ATGTGTTTTAAAATTTGGTTTTTGTACTTTTCAGAAATGCCTTCAAATGAAATTTGACAC
AGGAAAATTATTACTTTCTTGAAATTTTAAATTAACCGATTCAACATTGATCCTAAAGCC
AATTATAACCTACCAAGTCCAGTCAAAAGCCCAACTTACAAATCTAACCTTAAAAAAAAT
CCAATAAAAACTATTACTTATTGATATAGTACCTTTCTTCAACATTGTGCGGGATGCCGA
GATCGCCGGAGCGCAGTTTCCGGCTCACCTCCTCGATCTGTAGTTGTACTGCAAGGAACG
GATTAGCACCGCGACAACACACAACATTAGATAACACCCTGTGTATGGCTAGCTACGGAC
CTACCTTCACAACACAGACAACTGCCACTTACACAAATGTTAAACGGTTTCTTATTTTAT
ATACAGGGTGGATCTGGTGAAGAAAAGTTCTAAGTAGTCAGTCAGCTAGTACAAAGTTAC
AGATATATATTTTTTTGCAAGACAAACACGGCCTTAATGGTAAGTGACGACCCTCGTAAC
CCTCTGCGATGCAAGGGCATTTGGAGGTCCTAGCTTTATTAAAACTCGTTTAATATTTGT
GTAAATGATGTAGATAACAAAATAAATCTATTTAGTCTTTGATTCAACAACATGATTCTT
AGATAATTGTTCTCGATATTTATAAAATATAAGATAAAAGACAATAAAATGGCACACTGT
TGAAGCAAAGGGGCGAATTATAATTATAAGTTCATGTCATTTTAGTGTAATATTGGTACT
GGCAGTGAAATTTAGATGATGCCTTCAGAATTTTTTTTTGTATCGTAAATATTTCAAGGT
GTACAAAATTATATTGATAAATAATAGTATTATTGTTATCTTATGTAAACCAATGCGTGA
AAATTGTGTTTTAGTTAAATATTTAATTTATCGGAATAAAATTTTAAAAATGTATGTGTG
ATTTGTTAAATTCTCA
(3256 bp)

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