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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23043c2_g1_i8
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0090367 P negative regulation of mRNA modification
GO:1990635 C proximal dendrite
Transcript
Level		FPKM:4.09 TPM:4.01
ORF EntryO_TrvaFAMAMG26394_complete:A_TrvaFAMAMG_TR23043c2_g1_i8
Sequence
(Nucleotide)
GCGTTGCTGCTGCACGCCTCGCACCGGTGGTTGCAACACCCTCCCCCCTTCATTCTCGGC
TTCTCACTCGCCGCCGTCTTGCCGCTAGCCTGTCTCACCTCGCGGCCGGCAGCCTTGCGC
GACGCGCCGCGCTCTTTCACATTCAAAATTATTCGCAACCATTGCAAAAATCTCTGTGCA
ATAAAATTACAATATCGTTTATTGCGGTTATCATTAGATTTACTACAGAGGCATTAGAAT
TATATTCGTAAAACAAATTTTATTTTGCAAATTTAAGTGGCCATAAAAGTTTGAATGCAC
TCCTCGTTGCATATCCCGCGAATTCGCCTCGTTATGAGAACCCCGTAGGTACTGGCGGTC
ACGTTGACGTCGCGCGGACCGCGGTGCCGCCATATCTGTCTCGGCCACAACTAGCAAAAT
TAATAGGTAATTATTTTAGTTTACAGTGTTACATTTACATTTTGACGTTCAGTGATTGTG
CAATAAAGTGTTTCTTACCTTTGGATAAAGTCTACAGTGATTCCATTTGGATTCTATTCG
GAATAGAAGGCGCGCGCCGGCCGGTTCTTATCGGGTGCAATGCAGTTGCACTCATAACTT
ATTGCAGTTTTGCATTCGCCAAACTTTCATAGACGGAAAGTTTTATGTGTTAGCTTTATT
TTGTAGAAGGATTATCAATTGTGTTTTAAAGTGAATACTCTTTCGGTGATATTATGTGTA
ATAGTATCTAAAGAGCTGTCAGTTTACTGTACTGTGTTATTTCGGTCATTGACCGCCGGA
ATCACATCACCATAGTGTAATGTTTGGTTGTGTTTTAGTTTTTTTTTAATAATCCGATTT
TCGGTTTTTAGGGTCAAAATATTGTCCATCACTAATCTTTGAAATAAAATAACCCGCGCA
TTCGGTTTTTGAAATTCGCCTTCACCCGGATGGAATGAGGAGTGCACAATCTTATTGTTT
CACTGTTTCGTATGTTTGAACATCTTTTGTTTTTTTGTTTTTTGGACGATTAGCGTATTG
TCATTTTGTTACAAAATTACAAAAATTGTAAAATAAAGAATGGCGGAAGGCAATGGAGAA
ATACCCTATGATGAGGTAGCTGGAAAAGATTCTGATGTTGGCCGGACAGCAGATTACCAC
AAACTCCTTGAATATGGCTTAGATCCTAAGGTAGCCGCCAAACTCGACGACATTTATAAG
ACTGGAAAGCTAGCGCACGCAGAGTTGGACGAGCGTGCGTTAGATGCCTTAAAAGAATTT
CCATCCGACGGTGCTTTAAGTGTTCTTGGACAATTTTTAGATTCTAATCTCGAACATGTA
TCCAATAAAAGTGCTTTTTTATGTGGAGTTATGAAAACCTATAGACAGAAAAGTCGAGCG
GGCGTGCCTGGTGCTCCCGCGTTGACGCCCACTGTGCCGGTCAAGGGTCCAGATGAGGAA
AAAATAAAGCAAATTTTAGCCCGGACTGGGTATACATTAGATGTTACTACAGGTCAACGT
AAGTACGGGGGTCCGCCGCCCGGGTGGGAGGGGGGCACCCCGGGCGCCGGCTGCGAGGTG
TTCTGCGGCAAGATCCCCAAGGACATGTACGAGGACGAGCTCATCCCGCTGTTCGAGCGC
TGCGGGACCATCTGGGACCTGCGCCTCATGATGGACCCCATGACGGGCGCCAACCGCGGG
TACGCCTTCGTCACCTTCACCACGCGCGACGCCACGCAGCGCGCCGTGCACGAGGTTAGT
CATCCAACACATGTACCTACACGCACACACACACACCCACAGACACATGTACACGTACAC
ACAAGATACCTACAGTTGCACTGGTACAAAGGCAAATAAGAACACAGACACTGACAGTTA
CTTTCAATAATTTTCTTATATGGATACTGAAACAAGGACACGCAGAGATTTTGAAATACA
CAATAAAATTTTACAATTCTCAATACAATATGTAAAACAAAAAAACGTAGACACATTTTT
TTAGTCTTAAGGAGGCTCTCTGAAAGTGACAACATACAACATTACAATTCTAATTGTCAA
CTCGATTATACGAGATGTTTCTTACGTCCTAATGTATTATATAAAGTGTAGCTTTTAAAT
TTAGCCTTGTGTTTTGTCACATTCTGGAGCAATCAGAGTGCATGAGCACTAAACTCCGGT
GTACCGAGGCACAGGACGAGTGTTGTGGCGGTCGCGTTCGCGCGCCATGTCCTCCCGTCT
TATCTATATTTGTTATCGTGTAAAACAAAGGAGTCACTAGCACGATTGGTAACAACTAAA
TTGTGTCGAAAACTCGAACGATCACCGATAAATAGGGTTGCCAACTGTACTTATCTTTGT
GGCCTAAAAAATGAGACTAAGATTTTCTTTTGCAATCTTTAAATTATAATAACTTCAGTT
TTTTTTGTGTTATAATATCGAAAATCTTGCAATGAATGTAATTTATGGGTGGGTGGTTAA
ATTTAATACATATAGCTACTATTCTAGAGATGTAAAAATAATCGTATATAACGTTATTTA
ATCTTTTTTTTTCAATCGTAAGAATATATAACTGTACTACAATTTGATTTCAAAGTTGGC
AACCCTACCGATAAGTGTCACATGATGTTCTCACTTTTATAATTGGTGTGTGAATCTGAT
GCAAAATTTTCTAATTGAACGTCTACTTTGCAGGTTTCTCGTCGCAATGTTAATGACATT
CCTTTATTAACAGTATTAATGCACCGCGTTTCGCGTGTGGCGGTCTTTTTATTCCATTTT
CAAATTAAGTTTTATAACCGCCACGCGCGAACGTCGCTTGTCAAAGTACTCGTCCCATAA
ACCAGCACTTTGGCAAGCATTGCCTGTTCATATATTCTCAATCACTTGGGATGTTTATAT
TTAAGCTTGTCTCATTATATAGCATGTTATTAATAATCCTCCCAAAGGTCGTCATTCACA
TACACAACGCTTGAAACTTGTCCACTTCAAATGATTCAAATAGTGTTGTATGTGAATGGC
ATCCTTGCTGCAATAATCACATATTGTCTAAATGTGCAACCGTAACACCTATACTGAGTA
GCCTCGCTTCTCCTAAGACATGATCCCATAATGTAATGTTGCACCTCGTTCAATTTAAGT
TGCTTTCATTTTATTTACTGTATGTCACCATCACTCTAGTACTCGCTTCTTTTTATTTTC
ACTTCATCAAACGGTCCACTTACAGGGTTAACTTTGAATTGGCTTCGTAAAGTTCTCAAA
ACGAGAATAAATATCAGGCTCTCCTCTTTGCTCAGTCCACACTTTCGGCTTGTCATCCAA
AGTTCAGTTAACACATCACGATTGGCTCTAACCGTCATCTCCCGGAGCGGCTGTTGTCGC
GGCGCTAGTGACGCTACGTACCCGGCGTACAGTGCGCGACAGTACGACACGGCTCGACCG
GATCCGAATCACATTTTTCAAAATTGTTCCCTTGTTATTTTTCCCACAGCTCGATAATCA
CGAAATAAAACCAGGGAAGACTCTGAGAATTAAGATTAGCGTACCGAATCTGCGACTTTT
CGTCGGCAACATTCCCAAGTCTAAAGGCAAAGAGGAGATACTGGAAGAGTTTGGTAAATT
AACAGCTGGACTGGTTGAAGTCATTATATATAGTTCGCCCGATGACAAGAAGAAAAATAG
AGGATTTTGTTTTTTGGAATACGAGTCTCATAAAGCTGCGTCGCTGGCCAAACGCAGACT
CGGCACCGGAAGAATAAAGGTGAGTCGATCTCTGATAATATACATGTCTTATGCTATTAG
ATTGTGTGAAACAAAAGTTGAAATGATTTAATTTGTTACGTTGAAGCAGGTTTGGGGCTG
TGATATTATAGTCGACTGGGCTGACCCTCAAGAAGAACCCGACGAGCAAACTATGAGCAA
AGTGAAGGTGCTGTACGTGCGGAACCTAACTCAAGACATCACGGAGGAGGCGCTGAAGGA
GGAGTTCGAGCACTTCGGGAACGTGGAACGAGTCAAGAAGATCAAGGACTACGCGTTTGT
GCACTTCGACGACAGGGATGCTGCGGTTAAGGCGATGCAAGAACTGGACGGCAAGGACCT
GGGCGGGTCGCGCCTCGAGGTGTCGCTCGCCAAGCCTCCCTCCGACAAGAAGAAGAAGGA
GGAGATCCTGCGAGCTCGCGAACGGCGCATGATGCAGATGATACACGGCCGCTCCGGGTT
CGACTGGTGCGGATGTTCCCCGCCGCACGCGGGCCGCGGTCGCACGCCGCAGCAGGCGCC
GCGCCCGCAACACTCGAGACCCGATTACGGGTGGGTCATGTGGGACGGGCGGTCGGTGGG
CGCGTCGCGGGGCCGCGGCTGGGGCCCGTGGTGGTGCTCGCCGCGCCGCTCGTGGCCGGC
GCACGCCCAGCGCCACGCCTGGCAACCCGCGCGCCAACCCAAGTTTACCAGGTAAACGCA
AGCACGACGGGGGTCACGAGAACCAAGGGGGAGAGTCGAAGCGGCGGCTGGGCGCGGCGG
CGGCGTGCGAGTGGGGCCCGCCGGCGGCCGCCAGCTAGTGTCGCAGTGCGCCGCCGCCGC
CCCG
(4564 bp)

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