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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23043c2_g1_i6
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0090367 P negative regulation of mRNA modification
GO:1990635 C proximal dendrite
Transcript
Level		FPKM:12.52 TPM:12.26
ORF EntryO_TrvaFAMAMG26388_complete:A_TrvaFAMAMG_TR23043c2_g1_i6
Sequence
(Nucleotide)
GCGTTGCTGCTGCACGCCTCGCACCGGTGGTTGCAACACCCTCCCCCCTTCATTCTCGGC
TTCTCACTCGCCGCCGTCTTGCCGCTAGCCTGTCTCACCTCGCGGCCGGCAGCCTTGCGC
GACGCGCCGCGCTCTTTCACATTCAAAATTATTCGCAACCATTGCAAAAATCTCTGTGCA
ATAAAATTACAATATCGTTTATTGCGGTTATCATTAGATTTACTACAGAGGCATTAGAAT
TATATTCGTAAAACAAATTTTATTTTGCAAATTTAAGTGGCCATAAAAGTTTGAATGCAC
TCCTCGTTGCATATCCCGCGAATTCGCCTCGTTATGAGAACCCCGTAGGTACTGGCGGTC
ACGTTGACGTCGCGCGGACCGCGGTGCCGCCATATCTGTCTCGGCCACAACTAGCAAAAT
TAATAGGGTCAAAATATTGTCCATCACTAATCTTTGAAATAAAATAACCCGCGCATTCGG
TTTTTGAAATTCGCCTTCACCCGGATGGAATGAGGAGTGCACAATCTTATTGTTTCACTG
TTTCGTATGTTTGAACATCTTTTGTTTTTTTGTTTTTTGGACGATTAGCGTATTGTCATT
TTGTTACAAAATTACAAAAATTGTAAAATAAAGAATGGCGGAAGGCAATGGAGAAATACC
CTATGATGAGGTAGCTGGAAAAGATTCTGATGTTGGCCGGACAGCAGATTACCACAAACT
CCTTGAATATGGCTTAGATCCTAAGGTAGCCGCCAAACTCGACGACATTTATAAGACTGG
AAAGCTAGCGCACGCAGAGTTGGACGAGCGTGCGTTAGATGCCTTAAAAGAATTTCCATC
CGACGGTGCTTTAAGTGTTCTTGGACAATTTTTAGATTCTAATCTCGAACATGTATCCAA
TAAAAGTGCTTTTTTATGTGGAGTTATGAAAACCTATAGACAGAAAAGTCGAGCGGGCGT
GCCTGGTGCTCCCGCGTTGACGCCCACTGTGCCGGTCAAGGGTCCAGATGAGGAAAAAAT
AAAGCAAATTTTAGCCCGGACTGGGTATACATTAGATGTTACTACAGGTCAACGTAAGTA
CGGGGGTCCGCCGCCCGGGTGGGAGGGGGGCACCCCGGGCGCCGGCTGCGAGGTGTTCTG
CGGCAAGATCCCCAAGGACATGTACGAGGACGAGCTCATCCCGCTGTTCGAGCGCTGCGG
GACCATCTGGGACCTGCGCCTCATGATGGACCCCATGACGGGCGCCAACCGCGGGTACGC
CTTCGTCACCTTCACCACGCGCGACGCCACGCAGCGCGCCGTGCACGAGGTTAGTCATCC
AACACATGTACCTACACGCACACACACACACCCACAGACACATGTACACGTACACACAAG
ATACCTACAGTTGCACTGGTACAAAGGCAAATAAGAACACAGACACTGACAGTTACTTTC
AATAATTTTCTTATATGGATACTGAAACAAGGACACGCAGAGATTTTGAAATACACAATA
AAATTTTACAATTCTCAATACAATATGTAAAACAAAAAAACGTAGACACATTTTTTTAGT
CTTAAGGAGGCTCTCTGAAAGTGACAACATACAACATTACAATTCTAATTGTCAACTCGA
TTATACGAGATGTTTCTTACGTCCTAATGTATTATATAAAGTGTAGCTTTTAAATTTAGC
CTTGTGTTTTGTCACATTCTGGAGCAATCAGAGTGCATGAGCACTAAACTCCGGTGTACC
GAGGCACAGGACGAGTGTTGTGGCGGTCGCGTTCGCGCGCCATGTCCTCCCGTCTTATCT
ATATTTGTTATCGTGTAAAACAAAGGAGTCACTAGCACGATTGGTAACAACTAAATTGTG
TCGAAAACTCGAACGATCACCGATAAATAGGGTTGCCAACTGTACTTATCTTTGTGGCCT
AAAAAATGAGACTAAGATTTTCTTTTGCAATCTTTAAATTATAATAACTTCAGTTTTTTT
TGTGTTATAATATCGAAAATCTTGCAATGAATGTAATTTATGGGTGGGTGGTTAAATTTA
ATACATATAGCTACTATTCTAGAGATGTAAAAATAATCGTATATAACGTTATTTAATCTT
TTTTTTTCAATCGTAAGAATATATAACTGTACTACAATTTGATTTCAAAGTTGGCAACCC
TACCGATAAGTGTCACATGATGTTCTCACTTTTATAATTGGTGTGTGAATCTGATGCAAA
ATTTTCTAATTGAACGTCTACTTTGCAGGTTTCTCGTCGCAATGTTAATGACATTCCTTT
ATTAACAGTATTAATGCACCGCGTTTCGCGTGTGGCGGTCTTTTTATTCCATTTTCAAAT
TAAGTTTTATAACCGCCACGCGCGAACGTCGCTTGTCAAAGTACTCGTCCCATAAACCAG
CACTTTGGCAAGCATTGCCTGTTCATATATTCTCAATCACTTGGGATGTTTATATTTAAG
CTTGTCTCATTATATAGCATGTTATTAATAATCCTCCCAAAGGTCGTCATTCACATACAC
AACGCTTGAAACTTGTCCACTTCAAATGATTCAAATAGTGTTGTATGTGAATGGCATCCT
TGCTGCAATAATCACATATTGTCTAAATGTGCAACCGTAACACCTATACTGAGTAGCCTC
GCTTCTCCTAAGACATGATCCCATAATGTAATGTTGCACCTCGTTCAATTTAAGTTGCTT
TCATTTTATTTACTGTATGTCACCATCACTCTAGTACTCGCTTCTTTTTATTTTCACTTC
ATCAAACGGTCCACTTACAGGGTTAACTTTGAATTGGCTTCGTAAAGTTCTCAAAACGAG
AATAAATATCAGGCTCTCCTCTTTGCTCAGTCCACACTTTCGGCTTGTCATCCAAAGTTC
AGTTAACACATCACGATTGGCTCTAACCGTCATCTCCCGGAGCGGCTGTTGTCGCGGCGC
TAGTGACGCTACGTACCCGGCGTACAGTGCGCGACAGTACGACACGGCTCGACCGGATCC
GAATCACATTTTTCAAAATTGTTCCCTTGTTATTTTTCCCACAGCTCGATAATCACGAAA
TAAAACCAGGGAAGACTCTGAGAATTAAGATTAGCGTACCGAATCTGCGACTTTTCGTCG
GCAACATTCCCAAGTCTAAAGGCAAAGAGGAGATACTGGAAGAGTTTGGTAAATTAACAG
CTGGACTGGTTGAAGTCATTATATATAGTTCGCCCGATGACAAGAAGAAAAATAGAGGAT
TTTGTTTTTTGGAATACGAGTCTCATAAAGCTGCGTCGCTGGCCAAACGCAGACTCGGCA
CCGGAAGAATAAAGCAGGTTTGGGGCTGTGATATTATAGTCGACTGGGCTGACCCTCAAG
AAGAACCCGACGAGCAAACTATGAGCAAAGTGAAGGTGCTGTACGTGCGGAACCTAACTC
AAGACATCACGGAGGAGGCGCTGAAGGAGGAGTTCGAGCACTTCGGGAACGTGGAACGAG
TCAAGAAGATCAAGGACTACGCGTTTGTGCACTTCGACGACAGGGATGCTGCGGTTAAGG
CGATGCAAGAACTGGACGGCAAGGACCTGGGCGGGTCGCGCCTCGAGGTGTCGCTCGCCA
AGCCTCCCTCCGACAAGAAGAAGAAGGAGGAGATCCTGCGAGCTCGCGAACGGCGCATGA
TGCAGATGATACACGGCCGCTCCGGGTTCGACTGGTGCGGATGTTCCCCGCCGCACGCGG
GCCGCGGTCGCACGCCGCAGCAGGCGCCGCGCCCGCAACACTCGAGACCCGATTACGGGT
GGGTCATGTGGGACGGGCGGTCGGTGGGCGCGTCGCGGGGCCGCGGCTGGGGCCCGTGGT
GGTGCTCGCCGCGCCGCTCGTGGCCGGCGCACGCCCAGCGCCACGCCTGGCAACCCGCGC
GCCAACCCAAGTTTACCAGGTAAACGCAAGCACGACGGGGGTCACGAGAACCAAGGGGGA
GAGTCGAAGCGGCGGCTGGGCGCGGCGGCGGCGTGCGAGTGGGGCCCGCCGGCGGCCGCC
AGCTAGTGTCGCAGTGCGCCGCCGCCGCCCCG
(4052 bp)

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