SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23043c2_g1_i4
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0001649 P osteoblast differentiation
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008143 F poly(A) binding
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0017148 P negative regulation of translation
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0044822 F RNA binding
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070934 P CRD-mediated mRNA stabilization
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071013 C catalytic step 2 spliceosome
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0071346 P cellular response to interferon-gamma
GO:0090367 P negative regulation of mRNA modification
GO:0097452 C GAIT complex
GO:1990635 C proximal dendrite
Transcript
Level		FPKM:1.93 TPM:1.89
ORF EntryO_TrvaFAMAMG26383_complete:A_TrvaFAMAMG_TR23043c2_g1_i4
Sequence
(Nucleotide)
GCGTTGCTGCTGCACGCCTCGCACCGGTGGTTGCAACACCCTCCCCCCTTCATTCTCGGC
TTCTCACTCGCCGCCGTCTTGCCGCTAGCCTGTCTCACCTCGCGGCCGGCAGCCTTGCGC
GACGCGCCGCGCTCTTTCACATTCAAAATTATTCGCAACCATTGCAAAAATCTCTGTGCA
ATAAAATTACAATATCGTTTATTGCGGTTATCATTAGATTTACTACAGAGGCATTAGAAT
TATATTCGTAAAACAAATTTTATTTTGCAAATTTAAGTGGCCATAAAAGTTTGAATGCAC
TCCTCGTTGCATATCCCGCGAATTCGCCTCGTTATGAGAACCCCGTAGGTACTGGCGGTC
ACGTTGACGTCGCGCGGACCGCGGTGCCGCCATATCTGTCTCGGCCACAACTAGCAAAAT
TAATAGGTAATTATTTTAGTTTACAGTGTTACATTTACATTTTGACGTTCAGTGATTGTG
CAATAAAGTGTTTCTTACCTTTGGATAAAGTCTACAGTGATTCCATTTGGATTCTATTCG
GAATAGAAGGCGCGCGCCGGCCGGTTCTTATCGGGTGCAATGCAGTTGCACTCATAACTT
ATTGCAGTTTTGCATTCGCCAAACTTTCATAGACGGAAAGTTTTATGTGTTAGCTTTATT
TTGTAGAAGGATTATCAATTGTGTTTTAAAGTGAATACTCTTTCGGTGATATTATGTGTA
ATAGTATCTAAAGAGCTGTCAGTTTACTGTACTGTGTTATTTCGGTCATTGACCGCCGGA
ATCACATCACCATAGTGTAATGTTTGGTTGTGTTTTAGTTTTTTTTTAATAATCCGATTT
TCGGTTTTTAGGGTCAAAATATTGTCCATCACTAATCTTTGAAATAAAATAACCCGCGCA
TTCGGTTTTTGAAATTCGCCTTCACCCGGATGGAATGAGGAGTGCACAATCTTATTGTTT
CACTGTTTCGTATGTTTGAACATCTTTTGTTTTTTTGTTTTTTGGACGATTAGCGTATTG
TCATTTTGTTACAAAATTACAAAAATTGTAAAATAAAGAATGGCGGAAGGCAATGGAGAA
ATACCCTATGATGAGGTAGCTGGAAAAGATTCTGATGTTGGCCGGACAGCAGATTACCAC
AAACTCCTTGAATATGGCTTAGATCCTAAGGTAGCCGCCAAACTCGACGACATTTATAAG
ACTGGAAAGCTAGCGCACGCAGAGTTGGACGAGCGTGCGTTAGATGCCTTAAAAGAATTT
CCATCCGACGGTGCTTTAAGTGTTCTTGGACAATTTTTAGATTCTAATCTCGAACATGTA
TCCAATAAAAGTGCTTTTTTATGTGGAGTTATGAAAACCTATAGACAGAAAAGTCGAGCG
GGCGTGCCTGGTGCTCCCGCGTTGACGCCCACTGTGCCGGTCAAGGGTCCAGATGAGGAA
AAAATAAAGCAAATTTTAGCCCGGACTGGGTATACATTAGATGTTACTACAGGTCAACGT
AAGTACGGGGGTCCGCCGCCCGGGTGGGAGGGGGGCACCCCGGGCGCCGGCTGCGAGGTG
TTCTGCGGCAAGATCCCCAAGGACATGTACGAGGACGAGCTCATCCCGCTGTTCGAGCGC
TGCGGGACCATCTGGGACCTGCGCCTCATGATGGACCCCATGACGGGCGCCAACCGCGGG
TACGCCTTCGTCACCTTCACCACGCGCGACGCCACGCAGCGCGCCGTGCACGAGCTCGAT
AATCACGAAATAAAACCAGGGAAGACTCTGAGAATTAAGATTAGCGTACCGAATCTGCGA
CTTTTCGTCGGCAACATTCCCAAGTCTAAAGGCAAAGAGGAGATACTGGAAGAGTTTGGT
AAATTAACAGCTGGACTGGTTGAAGTCATTATATATAGTTCGCCCGATGACAAGAAGAAA
AATAGAGGATTTTGTTTTTTGGAATACGAGTCTCATAAAGCTGCGTCGCTGGCCAAACGC
AGACTCGGCACCGGAAGAATAAAGGTGAGTCGATCTCTGATAATATACATGTCTTATGCT
ATTAGATTGTGTGAAACAAAAGTTGAAATGATTTAATTTGTTACGTTGAAGCAGGTTTGG
GGCTGTGATATTATAGTCGACTGGGCTGACCCTCAAGAAGAACCCGACGAGCAAACTATG
AGCAAAGTGAAGGTGCTGTACGTGCGGAACCTAACTCAAGACATCACGGAGGAGGCGCTG
AAGGAGGAGTTCGAGCACTTCGGGAACGTGGAACGAGTCAAGAAGATCAAGGACTACGCG
TTTGTGCACTTCGACGACAGGGATGCTGCGGTTAAGGCGATGCAAGAACTGGACGGCAAG
GACCTGGGCGGGTCGCGCCTCGAGGTGTCGCTCGCCAAGCCTCCCTCCGACAAGAAGAAG
AAGGAGGAGATCCTGCGAGCTCGCGAACGGCGCATGATGCAGATGATACACGGCCGCTCC
GGGTTCGACTGGTGCGGATGTTCCCCGCCGCACGCGGGCCGCGGTCGCACGCCGCAGCAG
GCGCCGCGCCCGCAACACTCGAGACCCGATTACGGGTGGGTCATGTGGGACGGGCGGTCG
GTGGGCGCGTCGCGGGGCCGCGGCTGGGGCCCGTGGTGGTGCTCGCCGCGCCGCTCGTGG
CCGGCGCACGCCCAGCGCCACGCCTGGCAACCCGCGCGCCAACCCAAGTTTACCAGGTAA
ACGCAAGCACGACGGGGGTCACGAGAACCAAGGGGGAGAGTCGAAGCGGCGGCTGGGCGC
GGCGGCGGCGTGCGAGTGGGGCCCGCCGGCGGCCGCCAGCTAGTGTCGCAGTGCGCCGCC
GCCGCCCCG
(2829 bp)

- SilkBase 1999-2023 -