SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23043c2_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_heterogeneous_nuclear_ribonucleoprotein_R_isoform_X3_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0003730 F mRNA 3'-UTR binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0005783 C endoplasmic reticulum
GO:0006397 P mRNA processing
GO:0007623 P circadian rhythm
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0030529 C ribonucleoprotein complex
GO:0043025 C neuronal cell body
GO:0043231 C intracellular membrane-bounded organelle
GO:0045727 P positive regulation of translation
GO:0048027 F mRNA 5'-UTR binding
GO:0070937 C CRD-mediated mRNA stability complex
GO:0071204 C histone pre-mRNA 3'end processing complex
GO:0090367 P negative regulation of mRNA modification
GO:1990635 C proximal dendrite
Transcript
Level		FPKM:19.47 TPM:19.08
ORF EntryO_TrvaFAMAMG26378_complete:A_TrvaFAMAMG_TR23043c2_g1_i2
Sequence
(Nucleotide)
CGCCGCCGGGCGCACGCCGCGCCGCCGGCCCGCCGCCAGCCCGCCGGCCCTCTGTTGTTG
ATTTGCTTCATGTTGAGTAGACGGAATGAGGACGCGATGGGGTCGAGGGCCGCTTGTGTT
ACCGTGTGCGAGTGTGTGCGCGCGTCGTGTCTACATGTGTCCGTGTGATTGCAGCTGGAC
TGGTTGAAGTCATTATATATAGTTCGCCCGATGACAAGAAGAAAAATAGAGGATTTTGTT
TTTTGGAATACGAGTCTCATAAAGCTGCGTCGCTGGCCAAACGCAGACTCGGCACCGGAA
GAATAAAGCAGGTTTGGGGCTGTGATATTATAGTCGACTGGGCTGACCCTCAAGAAGAAC
CCGACGAGCAAACTATGAGCAAAGTGAAGGTGCTGTACGTGCGGAACCTAACTCAAGACA
TCACGGAGGAGGCGCTGAAGGAGGAGTTCGAGCACTTCGGGAACGTGGAACGAGTCAAGA
AGATCAAGGACTACGCGTTTGTGCACTTCGACGACAGGGATGCTGCGGTTAAGGCGATGC
AAGAACTGGACGGCAAGGACCTGGGCGGGTCGCGCCTCGAGGTGTCGCTCGCCAAGCCTC
CCTCCGACAAGAAGAAGAAGGAGGAGATCCTGCGAGCTCGCGAACGGCGCATGATGCAGA
TGATACACGGCCGCTCCGGGTTCGACTGGTGCGGATGTTCCCCGCCGCACGCGGGCCGCG
GTCGCACGCCGCAGCAGGCGCCGCGCCCGCAACACTCGAGACCCGATTACGGGTGGGTCA
TGTGGGACGGGCGGTCGGTGGGCGCGTCGCGGGGCCGCGGCTGGGGCCCGTGGTGGTGCT
CGCCGCGCCGCTCGTGGCCGGCGCACGCCCAGCGCCACGCCTGGCAACCCGCGCGCCAAC
CCAAGTTTACCAGGTAAACGCAAGCACGACGGGGGTCACGAGAACCAAGGGGGAGAGTCG
AAGCGGCGGCTGGGCGCGGCGGCGGCGTGCGAGTGGGGCCCGCCGGCGGCCGCCAGCTAG
TGTCGCAGTGCGCCGCCGCCGCCCCG
(1046 bp)

- SilkBase 1999-2023 -