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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR23011c0_g4_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_low-density_lipoprotein_receptor-related_protein_6_[Bombyx_mori]
Ontology
GO:0001843 P neural tube closure
GO:0001933 P negative regulation of protein phosphorylation
GO:0003344 P pericardium morphogenesis
GO:0005041 F low-density lipoprotein particle receptor activity
GO:0005102 F signaling receptor binding
GO:0005109 F frizzled binding
GO:0005515 F protein binding
GO:0005576 C extracellular region
GO:0005769 C early endosome
GO:0005783 C endoplasmic reticulum
GO:0005794 C Golgi apparatus
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0005901 C caveola
GO:0006355 P regulation of transcription, DNA-templated
GO:0006469 P negative regulation of protein kinase activity
GO:0006897 P endocytosis
GO:0007204 P positive regulation of cytosolic calcium ion concentration
GO:0007268 P chemical synaptic transmission
GO:0007275 P multicellular organism development
GO:0009880 P embryonic pattern specification
GO:0009986 C cell surface
GO:0014029 P neural crest formation
GO:0014033 P neural crest cell differentiation
GO:0016020 C membrane
GO:0016021 C integral component of membrane
GO:0016055 P Wnt signaling pathway
GO:0016337 P cell-cell adhesion
GO:0017147 F Wnt-protein binding
GO:0019210 F kinase inhibitor activity
GO:0019534 F toxin transmembrane transporter activity
GO:0021587 P cerebellum morphogenesis
GO:0021794 P thalamus development
GO:0021987 P cerebral cortex development
GO:0030917 P midbrain-hindbrain boundary development
GO:0031410 C cytoplasmic vesicle
GO:0031901 C early endosome membrane
GO:0034185 F apolipoprotein binding
GO:0034392 P negative regulation of smooth muscle cell apoptotic process
GO:0035261 P external genitalia morphogenesis
GO:0042475 P odontogenesis of dentin-containing tooth
GO:0042802 F identical protein binding
GO:0042803 F protein homodimerization activity
GO:0042813 F Wnt-activated receptor activity
GO:0043025 C neuronal cell body
GO:0043235 C receptor complex
GO:0043434 P response to peptide hormone
GO:0044332 P Wnt signaling pathway involved in dorsal/ventral axis specification
GO:0044335 P canonical Wnt signaling pathway involved in neural crest cell differentiation
GO:0044340 P canonical Wnt signaling pathway involved in regulation of cell proliferation
GO:0045202 C synapse
GO:0045787 P positive regulation of cell cycle
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051091 P positive regulation of DNA-binding transcription factor activity
GO:0060021 P roof of mouth development
GO:0060026 P convergent extension
GO:0060059 P embryonic retina morphogenesis in camera-type eye
GO:0060070 P canonical Wnt signaling pathway
GO:0060325 P face morphogenesis
GO:0060535 P trachea cartilage morphogenesis
GO:0071397 P cellular response to cholesterol
GO:0071542 P dopaminergic neuron differentiation
GO:0071901 P negative regulation of protein serine/threonine kinase activity
GO:0071936 F coreceptor activity involved in Wnt signaling pathway
GO:0072659 P protein localization to plasma membrane
GO:0090009 P primitive streak formation
GO:0090090 P negative regulation of canonical Wnt signaling pathway
GO:0090118 P receptor-mediated endocytosis involved in cholesterol transport
GO:0090244 P Wnt signaling pathway involved in somitogenesis
GO:0090245 P axis elongation involved in somitogenesis
GO:0090263 P positive regulation of canonical Wnt signaling pathway
GO:1901998 P toxin transport
GO:1904886 P beta-catenin destruction complex disassembly
GO:1904928 F coreceptor activity involved in canonical Wnt signaling pathway
GO:1904948 P midbrain dopaminergic neuron differentiation
GO:1904953 P Wnt signaling pathway involved in midbrain dopaminergic neuron differentiation
GO:1990851 C Wnt-Frizzled-LRP5/6 complex
GO:1990909 C Wnt signalosome
GO:2000055 P positive regulation of Wnt signaling pathway involved in dorsal/ventral axis specification
Transcript
Level		FPKM:2.63 TPM:2.58
ORF EntryO_TrvaFAMAMG26167_3prime_partial:A_TrvaFAMAMG_TR23011c0_g4_i1
Sequence
(Nucleotide)
ACAAAATTTGGCATCTATTTTTGATAATTTAGCTGGAATTCCTAGAATTAAAGCAGAAAC
TAGGAAATAACGATGGGAATTTACGACAACAGAGTTCATTTATTAACCACAGTGCCTTAA
AAAGTTAACATTGATGATAGTTGACATTTGTTGTGTTTCAAAAATAAACAATTTGTTTTA
TAGTTTGTTCGTTGATTTTCACTTGTTTTCATTATGACAAAACGCCGGAGAATTCTCTAC
GCGGACAAAATTATACAAAACGTTGTTCATGTGTTTTGTTTGTTGATGTTTTTACAATTA
GAAGGTTACCATTCAACCCCTAGTAATCCTATACTACTATTTTCGACCGCACTAGACATT
CGTATGGTGAATACGTCTAGAGTAACTAAAATAAACACCATTGCTAAGGATCTGGAACAG
GGTACTGCTGTAGATTTCCATTATAAAAAAGGGCTGATATGCTGGTCCGATCAGAAGACT
GAACTAATACAGTGTATGAATTATAATGAAACACATACAGGGGAAAAGATGAAAATAGTA
TCAGAAGGTCTAGTAACACCAACGGGTATAGCAATAGATTGGTATACCGACAAATTGTAC
TGGACTGATGGAGAAACAAATAAAGTTGAAGTTATAAGCATAGTAGAGAAGTACAGAAAG
GTTCTATTCTGGTCTGAAGTTGACCTGGCTAGGGCTATTGCTGTTGTTCCTAAGGAGGGC
CTAATGTTCTGGACAGATTGGGGCGAAGTACCTAAAATAGAAAGAGCTGGCATGAACGGT
GATCCAGCCTCTCGCAAAGTTATAGTCAAAGACAATATATTTTGGCCCAACGGTATAACA
GTGGACTATGATAACAGTCTTATATATTGGGTGGATGCTAAACTTCATTTCATAGATGTT
ATAGATTTCAACGGAGAGAAACGAAAGAGTGTTGTTAAAGGTGGATTGGTTTATCCTTAT
GCTTTGACGTTTTTTAACGATAAATTGTATTGGACTGATTGGCAGAATTGGTCGATTAAC
ATGTGGGATATGGGAATAAACGGTCCTGAAATTAAGGAATTGATTAAATTACATCCCGTT
CCTGTAGATATAAAGGTGTATGATGAAAATAGACAAGTTATGGTAACCGAAGATTACCCT
TGCAAAGTAAATAATGGTGGATGTTCACATTTGTGCCTTTTGTCACCTGACCCTCCAGGA
TACAACTGCGCTTGTCCAACAGGCGTTAAATTAAGAGAAAATAGCAACACTACTTGTTAC
GATAGCCCACAATCACTACTCATAGTAGCTCAAAGATCCACCATATCTAAAATATCATTA
GATTCACCCGATTTTACACCTTATACATTACCTTTGAAAGATTTGAAACGGGCTTTAGCG
ATTGACTTTGATCCTAAAACTGAGTATATTTATTGGGCTGATGGCTTGGCCAAAACAATA
TCCAAAGCTCGTCTAGACGGAAGTGAACAGTCAGTTGTCATACACAGCAATGGAGTACCC
GACAGTATTGCTATTGACCCGTTATCCAGAAAAATATACTGGACCGACCCTTTTATGGAT
ACTATTAATGTGGCTAGACTTGATGGTAGTTATAAAAAGGTCATAATCCACAGCGAACTA
TACGACCCAAGAGCTATAGCATTACACCCCACAGCCGGCTGGATGTTCTGGTCGGATTGG
AACGAGAAGAAACCAAAAATAGAACGTGCAAATTTGGACGGAAGCGATAGAATATTGCTT
GTCTCTGAGAAACTGACTTGGCCTAATGGAATAGCTTTGGATACTGTGAGGAATAAGCTG
TATTGGGGTGATGCTAGGACTAGGAAGATTGAGGTATGTAACATGGATGGAACAGAGAGA
AAAGAATTTCATACCAACGATATAAGTCATATATTTGGTTTGACGT
(1906 bp)

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