SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR22586c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_ATP-dependent_RNA_helicase_DHX8_[Amyelois_transitella]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016787 F hydrolase activity
GO:0042802 F identical protein binding
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:7.98 TPM:7.82
ORF EntryO_TrvaFAMAMG25449_complete:A_TrvaFAMAMG_TR22586c0_g2_i1
Sequence
(Nucleotide)
AAAAGTCCATTTTATTCTGATTTGTGTTGTGTGGTTTGTGTATTCAAAATAAAATGGACT
TTTAATTTTATTTCACAGTATATAAATAAAAAACTAAAAAAATGGACGAAGTAGCTAAAT
TAGAGCATCTTTCCCTCGTATCAAAAATCTGCACTGAATTGGATAATCATCTGGGATTGA
ACGACAAAGATTTAGCGGAGTTTATAATAGATTTAGCTGACAAAAATCCAACATTTGACA
ACTTCAAGAAAGCATTAGTAGAAAATGGAGCTGAATTTTCTGATTCCTTTATGACAAATT
TGCTACGTATCATCCAGCATATGAAACCTGTCAACTCTTCTGGAACTAAAGCCACTGCAG
AACAAGAAAGTAAAAATCCTCTTGTTAAGAAGTTTCCTGGTTTAGCCATACCCAATGATA
AGCCTCATAAATTTTCTTCTGATGAAAGCAGTGATGATGAAAAAGATACGAAAAGAGTAA
CAGCCAAAGATTTGTTCAAGGAAGAAGCCAAGCCTAGCTGTAGTGACAATGTGGTTGATC
AGGCAATGGCAGAATTAGAAGCATTAGCACCTTCAAATTCCTCAAAGGAAACTCCAAAAA
GCAAAGAACCATCAAAACGGGAACGCAGTAGAAGTATAGATCGTAAGGATCGTAAGGTTG
AAGAATCAAAAAGAAAAAGAAGTAGGAGTAGAGATCGTAAGAGAAGCAGGAGTAGAGGGA
GAAGGAGAAGCAGAAGCAGAGGTAAGAGAAGTCGCAGCAGAGACAGAAGAAGTAGAAGTC
CTGAGAAGGATCGCAGGAAAAGATCACGTAGCCGTCACCGACACAGATCTAGGTCAAGAG
ACAGGCATAGAAGATCTCATTCCAGAGGAAGAAGATCCAGGTCCCGTGGCAGACGATCTC
GTTCAAGAAATAAAGAGGAGAAGTTTGATTACACTAAGAAGAACAGAAAGCGCAGTCCTG
AAGTAGAACTGAATGATGACCCTGAACCAGGAAAGATCTACAATGGTCGTGTTGCCAATA
TTGTTCCATTCGGTTGCTTCGTTCAAATCGAGGGGGTGAGGAAGCGGTGGGAGGGGCTAG
TGCATATATCACAGCTCCGGGCAGAAGGAAGAGTCACTAATGTGTCAGATGTTGTCAATA
GAGGTGATAAAGTTAAGGTGAAAGTAATCTCAATAACAGGGCAAAAAGTCTCTCTCACAA
TGAAGGATGTATGTCAAGAGACAGGCAAAGATCTCAACCCGTCGTCGCACGCGCATTTAG
AAGCCGAGCGTGAAGGCAGGAACCCGGACCGACCGCCGCCAGCCGCCACCGTGCTAGCCG
GATTACAGGGGGGAATTGATCCCGATGAAGATTCTAGCAGGAAGAGGGTCACTAGGATAT
CTAGTCCGGAACGATGGGAGATCAAACAGATGATATCATCAGGCGTCATAGACAAAAGCG
AACTACCGGACTTTGACGAAGAGACCGGTCTACTTCCAAAAGACGAGGACGGTGAGGCTG
ACATTGAGATAGAGTTGGTAGAAGACGAGCCTCCCTTCCTCCAGGGCCACGGGAGAGCCC
TGCACGACCTGTCCCCTGTGAGGATAGTGAAGAACCCGGACGGATCCCTCGCGCAGGCCG
CCATGATGCAGTCGGCGCTGGCGAAGGAGAGGAGGGAACAGAAGATGATACAGCGGGAAC
AGGAGATGGACAGCGTGCCTACTGGTCTAAACAAGAACTGGATCGACCCCCTCCCCGAGA
GCGAGGGTCGCGCGCTGGCCGCCAACATGCGCGGCGCGGGCGTGGCGCCGCAGGACCTGC
CCGAGTGGAAGAAACACGTCATCGGCGGGAAGAAGTCCTCCTTCGGCAAGAAGACCAACC
TCTCGCTGCTCGAGCAGAGGCAGTCGCTGCCTATATATAAACTTAGAGACGAGCTGACTA
AGGCGGTATCCGACAACCAGATCCTGATAGTGATCGGCGAGACGGGGTCGGGGAAGACGA
CGCAGATCACGCAGTACGTGTGCGAGTGCGGCGTGACGGCGCGCGGCAAGGTGGCGTGCA
CGCAGCCGCGACGAGTGGCCGCCATGTCCGTCGCCAAGCGCGTCGCAGAGGAGTTCGGCT
GTCGGCTCGGACAGGAGGTCGGCTACACCATCCGGTTCGAGGACTGCACCAGCCCCGACA
CTGTTATCAAGTACATGACAGACGGTATGTTGCTACGAGAGTGCCTCATGGACCTCGATC
TCAAAGCGTATTCAGTGATCATGTTGGACGAGGCGCACGAACGTACCATTCACACGGACG
TTCTGTTCGGTCTCCTCAAACAAGCCGTACAGAAACGACCAGAACTCAAACTGATCGTGA
CATCGGCCACGCTGGACGCCGTCAAATTCTCGCAGTATTTCTTCGAAGCCCCCATCTTTA
CAATACCTGGTAGAACGTTCCCTGTTGAAGTTCTGTACACAAAGGAACCGGAAACTGATT
ATTTGGACGCGTCTTTGATCACGGTCATGCAGATACACTTGAGAGAACCTCCGGGCGATA
TCTTGTTGTTCTTAACTGGTCAAGAAGAGATCGACACTGCCTGCGAAATTTTATATGAAA
GAATGAAGTCTTTGGGCCCCGATGTGCCGGAGTTGATCATTTTACCGGTTTATTCCGCGT
TGCCGTCTGAAATGCAGACCAGGATCTTCGAGCCGGCCCCGCCCGGGTCCAGGAAGGTGG
TCATTGCTACCAACATAGCGGAAACGTCGTTGACGATCGACGGCATTTACTACGTTGTCG
ATCCTGGGTTCGTGAAACAGAAGGTTTACAATTCGAAGACTGGAATGGACTCGTTGGTCG
TTACTCCGATATCGCAGGCCGCCGCAAAGCAACGAGCGGGTCGGGCGGGCCGCACGGGGC
CCGGCAAGTGTTACCGGCTGTACACGGAGCGCGCCTACCGGGACGAGATGTTGCCGACGC
CCGTGCCAGAGATACAGCGGACCAACCTCGCCACCACGGTACTACAATTAAAAACGATGG
GTATAAACGATCTGTTACACTTCGACTTCATGGACGCGCCGCCCGTCGAGTCTCTCATCA
TGGCGCTCGAACAACTGCACTCGCTCTCCGCACTCGACTCCGAAGGACTACTCACGAGAC
TGGGCCGTAGAATGGCCGAATTTCCTCTAGAGCCAAACCTATCAAAGATTCTTATTATGT
CGGTAGCCCTACAGTGCTCAGACGAAATACTAACCATAGTCTCAATGTTGAGCGTACAAA
ATGTCTTCTACCGACCCAAAGACAAACAGGCTCTTGCCGATCAGAAAAAGGCCAAATTCA
ATCAACCCGAAGGAGACCATTTGACGTTACTGGCAGTTTACAACAGTTGGAGAAACAATA
AGTTTTCAAATGCTTGGTGTTATGAAAACTTCGTGCAGATTCGAACTTTGAAGCGGGCTC
AGGATGTCAGGAAACAGTTGCTCGGGATTATGGATAGGCATAAACTAGATGTAGTATCAG
CGGGTAAGAACACAGTTCGCATTCAGAAGACGATATGCTCCGGTTTCTTCAGGAACGCGG
CCAAGAAGGACCCTCAAGAAGGATATAGGACGCTCGTGGACAGTCAAGTTGTCTACATAC
ACCCGTCCAGTGCACTGTTTAATAGACAACCGGAATGGGTAATCTACCACGAATTAGTGC
AAACAACTAAAGAATATATGAGAGAAGTTACAACCATAGATCCAAAATGGCTGGTAGAGT
TTGCTCCCGCCTTTTTCAAGTTCTCGGACCCAACGAAACTGTCCAAATTCAAGAAGAACC
AGAGACTGGAACCGTTGTATAATAAATATGAGGAGCCTAATGCTTGGAGAATATCAAGAG
TCAGACGCAGAAGAAATTAGATCATAGACCATGATTTTGATTTTGTGTACAGATAATAAA
ATTATTACTAAGTAAAAAAAAAAA
(3924 bp)

- SilkBase 1999-2023 -