SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR21649c0_g1_i3
Scaffold_id
NCBI non-redundant
(nr)		Paired_box_protein_Pax-6_[Papilio_xuthus]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000132 P establishment of mitotic spindle orientation
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000979 F RNA polymerase II core promoter sequence-specific DNA binding
GO:0000981 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0001077 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001227 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001228 F DNA-binding transcription activator activity, RNA polymerase II-specific
GO:0001568 P blood vessel development
GO:0001709 P cell fate determination
GO:0001764 P neuron migration
GO:0001933 P negative regulation of protein phosphorylation
GO:0002052 P positive regulation of neuroblast proliferation
GO:0002088 P lens development in camera-type eye
GO:0003309 P type B pancreatic cell differentiation
GO:0003322 P pancreatic A cell development
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0003700 F DNA-binding transcription factor activity
GO:0005515 F protein binding
GO:0005622 C intracellular anatomical structure
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0007224 P smoothened signaling pathway
GO:0007275 P multicellular organism development
GO:0007409 P axonogenesis
GO:0007411 P axon guidance
GO:0007420 P brain development
GO:0007435 P salivary gland morphogenesis
GO:0008134 F transcription factor binding
GO:0008285 P negative regulation of cell population proliferation
GO:0009611 P response to wounding
GO:0009786 P regulation of asymmetric cell division
GO:0009950 P dorsal/ventral axis specification
GO:0009952 P anterior/posterior pattern specification
GO:0009953 P dorsal/ventral pattern formation
GO:0010468 P regulation of gene expression
GO:0010628 P positive regulation of gene expression
GO:0019901 F protein kinase binding
GO:0021543 P pallium development
GO:0021778 P oligodendrocyte cell fate specification
GO:0021796 P cerebral cortex regionalization
GO:0021797 P forebrain anterior/posterior pattern specification
GO:0021798 P forebrain dorsal/ventral pattern formation
GO:0021902 P commitment of neuronal cell to specific neuron type in forebrain
GO:0021905 P forebrain-midbrain boundary formation
GO:0021912 P obsolete regulation of transcription from RNA polymerase II promoter involved in spinal cord motor neuron fate specification
GO:0021913 P obsolete regulation of transcription from RNA polymerase II promoter involved in ventral spinal cord interneuron specification
GO:0021918 P obsolete regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment
GO:0021978 P telencephalon regionalization
GO:0021983 P pituitary gland development
GO:0023019 P signal transduction involved in regulation of gene expression
GO:0030154 P cell differentiation
GO:0030216 P keratinocyte differentiation
GO:0030334 P regulation of cell migration
GO:0030858 P positive regulation of epithelial cell differentiation
GO:0030900 P forebrain development
GO:0031625 F ubiquitin protein ligase binding
GO:0032808 P lacrimal gland development
GO:0033365 P protein localization to organelle
GO:0035035 F histone acetyltransferase binding
GO:0042462 P eye photoreceptor cell development
GO:0042593 P glucose homeostasis
GO:0043010 P camera-type eye development
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045165 P cell fate commitment
GO:0045665 P negative regulation of neuron differentiation
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0048505 P regulation of timing of cell differentiation
GO:0048596 P embryonic camera-type eye morphogenesis
GO:0048708 P astrocyte differentiation
GO:0050680 P negative regulation of epithelial cell proliferation
GO:0050767 P regulation of neurogenesis
GO:0060041 P retina development in camera-type eye
GO:0061072 P iris morphogenesis
GO:0061303 P cornea development in camera-type eye
GO:0070410 F co-SMAD binding
GO:0070412 F R-SMAD binding
GO:0071837 F HMG box domain binding
GO:2000178 P negative regulation of neural precursor cell proliferation
Transcript
Level		FPKM:0.21 TPM:0.21
ORF EntryO_TrvaFAMAMG24748_complete:A_TrvaFAMAMG_TR21649c0_g1_i3
Sequence
(Nucleotide)
GCAGTCGCTACCCAGCCGTGACTTAGTGAACGCTCTACGGACCCGCGTATCCAATTATTA
CGCGGTACGCTACCCAAGCGATTCAAAACTTGTCAAATTACGATTTGGACAGTGTCGATA
TCTGGGCGGTTTACCCCATTCGGTTGAGTGAGTGTGTGTGTGTTCCCGGTTTTTAGATCT
TCACCTTCAACAGTGCAATGGTGAAAAATTTTAAAGTATAAAAATAATTTATCTTGCGAC
GGATTTTAAGCAGTGAAACCGGTTAAAGTGTGGGGTTGAAGTTAACATTATTAGCGATTA
CTTACAAGTTGGGATAATACCTATATCAGAGATTTTTATGTAGTTAAAACAATTTATATT
AAAGTTAAATTAAACACTTGGCTAAGTTAATTTAAGAGTATTCATGACAAGATAATATAA
GAGGCCTGTTCAGGTTGTACTCAGGATAGCGTGGGGGTTATTAAGTGTTGTCAGGGCCGT
ATTTAGGGTGGCTCTGCACGGGGGCTGGGGGCGGCCGGCGCCTGCGCCCGCGCACGCCGC
CACGCTCGTCGGGGGGTTGGTAGCCCCGCCGAGGGAACCAACCACGGCGGCCGAAGCCTT
CTGGAAAATGCCGCATAAAGATGAGCTCATGCACAGCGCAGCGATGGGCGGAGGTGGTCT
CTTTGGATGCTCCTCAGCAGGCCACAGTGGTATCAACCAGCTGGGCGGGGTCTACGTCAA
CGGACGACCGCTGCCGGACTCGACGAGACAGAAGATAGTGGAGCTGGCGCACTCTGGAGC
CCGACCTTGTGACATCAGCCGCATCCTACAGGTCTCCAACGGCTGCGTGTCTAAGATACT
CGGCAGACCCCATCCAATCAGAAGCCGGGTCAGACGGGAACAGTGAACACGCGTCATCAG
GAGACGAGGACTCCCAGATGAGGCTACGACTGAAGAGGAAACTGCAGAGGAACAGGACCA
GCTTCACGAACGACCAGATAGATAGTCTTGAAAAAGAATTCGAGAGGACCCACTACCCTG
ACGTGTTCGCGAGAGAACGACTGGCGGAAAAGATCGGATTGCCTGAGGCACGTATCCAGG
TATGGTTTTCGAATCGACGCGCAAAATGGCGTCGCGAAGAGAAACTCAGGAGCCAACGTC
GTGACGCGCCCGCCGCCTCTCCCCCCGCGCCACCGGCACCCCGGCTTCCCCTCAACGGAG
GCTTTAACTCCATGTACAGCCCCATACCGCAACCCATCGCTACTATGGCTGATTCTTACA
GCTCGATGTCCGGTGGTCTGTCATCGTCGTGTCTTCAGCAGCGAGACGGCGGCTACCCGT
ACATGTTCGGTGACGTGTTGGCGAGCGGGGGGTATTCAAGAGCGCCGGCTGCCCATCAGC
AGCATTCCGCTTATTCACAACCACAACCAGCTGGGAGCACGGGTGTAATATCGGCGGGCG
TGAGCGTCCCCGTGCAAATACCGTCGCAGGGGCCCGACCTCGCGTCCAACTACTGGGGCA
GGCTCCAGTGATCTCAGCTTTTCGGGTTCCCGCATCGGCTGTTGTCGATGACTGAGAACC
CGACGGCTCTGTCCGAGTCGCCATCTAGCGAGATCGCGCACAACTACGCCGACTCGCACT
TAGCCATCAACGCGGCGCTCAACATGACAGCCGGCCATGATGCCGTTTTGGCGGGAGAAA
TCCAAGAACAAAACAATTCAGTGTCGTAATTCAACGTAGTGTTTTTTTGTTTACATGGTG
CAAATATCGTGTACAGTGATAAATTAATTATAAGGAAGCAACTGATGATGTTCAAAATTA
GTTTTAAGACACGATGGGATGTGCAGTACACTGCCACTATTTATTTTTATTGTAATTCTT
GTATTAAAGTATGATCGCTGCACGACGCATCGTGTTCGGTTTGTAAATATTGCGATAAGC
GACATCTACCGTCGAGTAGGCGAACTGAAGACGCCGTGTTCACTGACGAATATAAAAATA
TAAATTGTTTGTGCCAACGTTTGTTATAATTGAGTGTTATGCGCCCTTTACGAGCACAAC
CCTTTATTTCTTTGATGTATTTCGTTGGGGTGGGAAATATTAATGCCACGGTGAAAAATA
AGCTTCGTTACAACCGTTTGTTTTCGTCCCCTACGTTGCGTCGCCAAACAAATTGTCACT
GCATAATCATGTTTGTATCGAGACTTGTATAATAAACTAATAAATGTCCGTGTCGTGTTT
CATGACGTCATAACCGGTTAACTAATTGTTTTATTTATTTTATATGTAATTTATTAAATG
TACATCAATACACGTACTGTGATTTTAAATAGTTTGTAATTTTAACGATATTTTCTCATA
ATTTTTGAATTTAACGAATTTTTAATAGTTACAATGAATGCTAAAATCAGCACAATATAT
TTTTAACTTATTATTTAAATTGTAAATTATATTTTCAGTAAGTTTGCAATATCGGAGTGG
TGGAAGCTATAATTATTGTATTTA
(2484 bp)

- SilkBase 1999-2023 -