SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR21644c0_g3_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_DENN_domain-containing_protein_1B-like_isoform_X2_[Bombyx_mori]
Ontology
GO:0005085 F guanyl-nucleotide exchange factor activity
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005886 C plasma membrane
GO:0006810 P transport
GO:0006897 P endocytosis
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0017112 F guanyl-nucleotide exchange factor activity
GO:0017124 F SH3 domain binding
GO:0017137 F small GTPase binding
GO:0030054 C cell junction
GO:0030136 C clathrin-coated vesicle
GO:0030425 C dendrite
GO:0030665 C clathrin-coated vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0032266 F phosphatidylinositol-3-phosphate binding
GO:0032456 P endocytic recycling
GO:0032483 P regulation of Rab protein signal transduction
GO:0042734 C presynaptic membrane
GO:0043025 C neuronal cell body
GO:0043547 P positive regulation of GTPase activity
GO:0045202 C synapse
GO:0048488 P synaptic vesicle endocytosis
GO:1901981 F phosphatidylinositol phosphate binding
Transcript
Level		FPKM:0.15 TPM:0.14
ORF EntryO_TrvaFAMAMG24711_complete:A_TrvaFAMAMG_TR21644c0_g3_i3
Sequence
(Nucleotide)
GGGAACATTGCCAACAATTCGAATTGCTATGTTGAAATTCTCAAATTCTGTTCTTATTTC
ATAAAAGTTGAATGGTGTGCAGTAGTCCAACACGTAATGAATAAGATCTTGCTACATGAT
CTGATATTTTACGAAATTAAATTAAACACAAAGATCTGTTAGTAATACAGTCGGAGAAAA
GATACAATCATCCCTATCACTGCGTCCGTCACTCGTAATAGTTTGGAAATAGGTGTATAA
TCATCGCGAAATGTTGTTTGCGAACGTGAAGTAATCTTCTATGGCTTGCGATGTTTCATG
ATACCAAGTGAATTAACTAACAAATCGTTGGCAGTTTGTTTCGTAAAATGTGATCAAAAT
TTCTAATCCACGTCGAGATATGGGTTCCAGAATAAGAGATACTGTCAAATTTTTGTTTGA
GTTATTCTGTGAAGTATCACCAGGGGATCATTTGAAGGAACCACATGTATTATTCAAGTA
TCCAGAATCTTACAGAAATGAAGAGGAGATTAAAAGCATCCCCAAATTTACCTTTCCGTG
TACATTAGAAAACTCCTTTGCGCAACATTACTCATTTGTGCTAACGTCTATGGATTCAAA
GTATACATTTTGTTTTTGCCGATTTGATCCAAAAGCGAACACTGCCCTGGTGATCTTGTC
ACATCTGCCATGGCATGACATATTCTATAAGCTACTAAATTGCATAGCGAATATAATAAA
CAGCCCAGAGAAGGATCAATTGACATCGTTTCTGGAAGCATGTCGTATCCGACCTCCGAT
GCCGGGACACACACTTAAAGTCATATACAATGCCGGCCACAGTGTATTTACTTGTCAATG
CCCCGACAATAAGCTTCCTAGCATTCCAGATAATTGCAACCTAACGGAATACTTCAGTGC
GGTTGACACGAAATGCATGGCGGGATTGTGGGCGGCGTTGTTACATGAACGTCGTGTTGC
CATTGTGGCTTCAAAACCGTCGCGTTTGTCCGCTTGCGTGCAAGCAGCGAATGCTACCCT
TTTCCCGATGTCATGGCAACACATATTCATACCGATACTGCCGAAGCACCTTGTGGATTA
TATGTTGGCGCCGATGCCGTTCCTTATCGGAGTTCCTAGAACCGTTATGGAGAATGTAAG
GATGTCAGAGATAGGTGACGTTGTGATTTTAGATGTAGATGCGAATGAGCTTAGAACTCC
TTTTAATGATTTAGAAAGTCTTCCTCCTGAGTTAGTTTCGAGCTTGAAGAAGTCGTTAAG
TGATAAAAACGCTCTTGGCGATGCTGTATCAAGAGCTTTTTTACGCGCACTTGTCTGCTT
AATCGGCGGATATCGCGATGCTATCAAAATTGAAAATGGTCAACTGATCACATTCAATCC
TGAGGCATTCGTGAAAACGAGAAAAAACATGCAACCATTCCTTAGAAAAATACTTCAATC
ACAAATCTTCCAACAGTTTATAGACGAAAGACTGGATTTGCTCAATTCCGGACGGGGTTT
CAACGATGAATTCGAAGTCGAATGTAACGCTTACGCCGACAAACTGAACACAGGCAGCGG
TCAGAAACTAAAGCAACAGTACAGAGACTGGGCCAAAACCGTTAAGAAAGAAGGCGGTGC
TTTCTTCAAAACCGTCAAAGATAAGGTCCGCCAGGGTGGTAAAAACATGAAATCCGCTGT
AAGAGGACTGAAAAATAAAATGCCTAAGTCGGGATCTCGGCCCTCTTCGATAAACACCAC
CGACGAGAGCAGGTACTCATGTGGCTCGGCTACCCCGGTGTCATCGGACTCGTCTGACTC
TCCGACGCACGACCTTCCCCCGCCCCGCGACCCGCCGCCCGCCCTACCCCTCGATCTACT
CACCGAAATGGAATACCTATTCGCGAACAAGAACGCGCAACGACGCGACAGCTTCCCGAA
TAGTTCGCGGAACGCTGATATTAGTCTACCCGATAAGGCAGTAAGTCTCAAGCGAAAATG
TACCCTCGTCACCTATGTATAGATGTCATAGTAGAGTGTTGGCTCGCTTTGTTTCGTACT
GTAACGTTATGCTTTGTTAGTGGACGTCATCATTGCTTTCGACAAGACACTTCTCTCATT
TTATCGATAATCATATTATTATCCTAATCATTCTTTATATTTAATCATTCGAGTACCTCA
TGTCTGTAAGTGTTTTCAGTCGAAGGTATTGATAACACCACAGTTGTATGTAGCTACCTT
TTTCAAACGTAAGCGACAAGAGTCAAAGTTTGAAAAAGGAACGTCATAATCACTGATCAT
TTATAATGAAATGTTGTTATATAACGCGTATAATTGTTAAGCTTGAAACACCTGTACCGT
TGCATAGTTAGACAGTGTACCGTGATTAGTACGATAGTGAATGTTAGAAGCATGTATGCT
CCTAGGAGCACCGTGGCACATTATTTGATTTTGTTTTGCAGAAGACACTGTCACCATGCC
TCCCACCCCGGTTACCGGAACGTCCCCAAGTCCCAGTCCGTTACCCAATAATTTCCACGA
GGAAACTAATAGATATAAGCGACGCTCCGACGCCGCCGCCGAGGGCGACGCCCGCCCAGC
AGTTCAATGCGCACTTTGTCAGTAACATCACCAAAAACGATGTGAAAACGACGACAGACC
TCCACACTAGCTCCATTTGCTTCAGTGAAGGCAACGACAAGGCCAAACTGAAACTGACGC
TGTCGTCTAATCAGAGGAAGGCGGGGCAGCAGATGGCGGCCGCGCCCGCACCCGCGCCCG
CACTAGCGCCTCCGACCGCGCCCGCACCGCCGTGTAACGGTAACGTGCGCCCTAGACTAG
CGCCCTCTGTGGCCCACACGCGACTACATACGGCCATTCCCAACAACAGAGGGAACTTAC
AAGAGGTAATTGTGATATGCACATTTGTTATAATATCGATATTGTATCTCATCGTAAAAG
ACAGACTGGCCATTCCCTGAGTACCGACGTGTGTTTAGTGTAACTAACACACGTCTATAT
TGTTATTTAAAAAAGTGAATGTTAAACTATTGTTAGTGATTATGATTTTAATATACTTCT
AACATACGTAAAAGTTGTCCCTTTATTCCTTCCGTTAACTTTCGAACCCCTACCGCTCTT
TATCATAGTTCAGTTGGTAAACAAATTGTTAAGAGGCATCTGTAACATATAAGATCTTAG
CATGATGAACTGTGTCATTAGAATCATTAATTGATACTTGTATCAAATTGTTTCAACGAA
ATTATCACTCTATAAGAGTGCCATTTTCGTGTACAATTTTACTGTAAATTAATTATTAAT
GAGTCAACTTTAGTGTATCTAAAGTTTACAATTGGATAATGTGTATGAAAACTGGAATTA
TAAAGTTTCAAGCATATCTATATTTAATTTTAAATGTAGTAGCGTTCAAAACAGCCACGT
TACAAGTAAAATTAGTGGAAATGTTACACAATAAAATATTTTATAGAAATCAGAACTAAT
GTTTTATAAAGCTGTGGATTTGCATAAGAATTATTGTGCAAAAATCACCTCTGAATTGTT
ATCGTAAGCACTATTTTCTATATTCCAAAACATTTTAATCATATCGTATATCA
(3593 bp)

- SilkBase 1999-2023 -