SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR21626c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_RR46_03433_[Papilio_xuthus]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:0.45 TPM:0.44
ORF EntryO_TrvaFAMAMG24599_complete:A_TrvaFAMAMG_TR21626c0_g1_i2
Sequence
(Nucleotide)
TTTATTTTTTCATAATTTTATTTTGAAACGCTATAAAAGCTTTCTAATCGATAAGGAATC
AGTTAGTTTATAAGGAAATGAAAATAAGTAGGTTTTAAAAACCACTTAAAATGTCAGATC
CTGAAGAAAACGTGCATCGTTTGGAGGGAACTTCTGGCGATGCTCCCGGCGGTCTAATCA
TCAAGAAAAAGGATAAACCACCAGATATCCAGTTTGCAAAACCTTCTTTATTAGGTCTAG
ATAAGTTAGCGGCCGCGAAACGTAAACAAAACCGGTTAATTTCGTTCCAAACTGAAGATA
ATGAGGACGAAGGCACCAGTGCTGAAAACGAAGTGAAAGAACGTAAATATAGGAAACACA
ATGAAGAAACACCAACTTACACTGGTGGAATATCGGAGCAGGCGCGGGAGAGGATCATAG
AGAGGATGCAGAAAAAAGAAAAGCAAGCTAAAGAAAAAGGAGTGCACAATTCAACTCAAG
AGGAAAAGAAAACTCGGTCTCGTGAAGATGATGACTACTACCGTCGATACGATAGAAGAG
ATCGTAGAAAAGATGACTATAGGAGAGACAGGGACAGAGGAAGGAGGGACAGAGATGAAG
ATAAAAGAGAAAGAGATAGATATGACAGGGATAGAAGAGATCGTGACAGTGAAAGGAGTA
GTTCCAGACGAAGTTATTATAATCCTAAATTTAAAGATGAACCGAGAACTCCCAGTATAA
GTGCTCTAAAACCTACCGAAAAAACTGCCTGGGATGATGATGATGACGACCCCAAGTCAA
CTGTTCGTAAATCAAGTTGGGACTTTCCTACACCTCTTACCAGAGATTACGATCAACGTA
GCGAGAGAGGGAATCGTACTATGAGGGATTATAAGGGCAGAGCATATGAAAATACACCTA
GAGCAACACCGCATAAGTTTGCCAGTTCTCGTAGACTGGTAGATGTTGATGATCCTGATT
GGCAAGAAGCTGAGAAAAAACTAGACAGAGATTGGTACAACATGGGTGAAGGTGAGGCAG
ACGAATCAGATCCATTTGGGAACACGAGCGAAGAGTACATAGCTCGCAAAGAGGAACAGA
TAGAGAAACGACGGAACCGGAAAGTCTCTGCGCAGAGACAACAGATAGATAAAGATAATG
ATCTGTGGGAGCGAAACAGAATGTTGACCAGTGGCGTTGTACACTCTATCAATGTTAACA
ATGATATGGATGAGGAAAATGTGGATCGTGTGCATTTGTTAGTTCATAACATAGTACCAC
CGTTCCTTGATGGAAGAATTATATTTACTAAGCAACCGGAACCCGTTATTCCTGTAAAAG
ATCCAACATCAGACATGGCCATGAACGCTCGGAAAGGCTCGGCTCTGGTCAAAGCGTTTA
GAGAACAGAAAGAGAGGCGGAAGGCGCAGAAGAAACATTGGAAATTAGAGGGAACTAAAC
TTGGTAATATAATGGGAATACAGAAAGAGAAAGAAGAATTAGAAGACGGACCGACAAGAG
AAGCTTATAAATACGCAGAACACTTAGATAAAGAAGCCCAAGAGCCGGAATCTAAGTCAG
ATTTCGTCAAGAAAATGACGATATCAGAGCAAAGAAGGTACCTACCCGTGTTCGCTGTAA
GAGAAGAACTTTTACAAGTTATCAGAGAAAACAACGTTGTTATTATTGTTGGTGAGACAG
GGAGCGGTAAGACGACCCAACTGACACAGTATCTGCACGAGGAGGGGTTCAGTAAGCTCG
GCACTATAGGCTGCACGCAGCCGAGGCGCGTCGCCGCCATGTCTGTCGCCAAACGAGTCT
CAGACGAGATGCACACCAAGCTAGGCGACGAAGTGGGCTACGCGATTCGTTTCGAAGACT
GCACATCACCAAATACAGTCATCAAATACATGACAGATGGTATCTTATTACGAGAAGGCC
TGAGAGAACCGGATCTCGATAATTACTCGGCTATCATCATGGACGAAGCTCACGAACGGT
CACTGTCCACTGATATGCTGTTCGGACTGTTAAGAGAGGTAAGTAAAGATTTTAGGAGTT
TTCAGCTGGTGTCTTTAGGGCCTAGATATTTGAACCTATTCAAGTTATACGAATTTCTAG
CGCTGTAATTAAAGTCACGTATCGATTTCACTTATTGACAATATTCGTGAAAAATCTGGC
TCGAAGGACCACGTTGTGAAGATCTTATTCTAGTCGCGACGAGGTAAGTGTATATTTTTG
GGAATTTTCAGCTGGTATGTTTGAAGATTACAAATTATTCTATTTAATTTAATATTTCTC
CAATTAGTCTTTTGTTTGAATATTATATGTATAGCAAGAGGTTTTTATTACAAGAGTTCT
ACGAAGACTGTGGACCACCCCAAGGTAAATCACTCACCGATGCCAGGACATGACAGGAAC
AGATTTTTCTTACGAATCTGGCTCAAAGGATCACGCTATGAAATGTAACAGCTATCAAAT
ATATGAAACGATCTAATTCTACTGGTATGCG
(2491 bp)

- SilkBase 1999-2023 -