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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR21626c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_pre-mRNA-splicing_factor_ATP-dependent_RNA_helicase_PRP16_isoform_X1_[Papilio_machaon]
Ontology
GO:0000166 F nucleotide binding
GO:0000398 P mRNA splicing, via spliceosome
GO:0003676 F nucleic acid binding
GO:0004004 F RNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005681 C spliceosomal complex
GO:0005737 C cytoplasm
GO:0006369 P termination of RNA polymerase II transcription
GO:0006397 P mRNA processing
GO:0006405 P RNA export from nucleus
GO:0006406 P mRNA export from nucleus
GO:0008026 F helicase activity
GO:0008380 P RNA splicing
GO:0016020 C membrane
GO:0016787 F hydrolase activity
GO:0031124 P mRNA 3'-end processing
GO:0044822 F RNA binding
GO:0071013 C catalytic step 2 spliceosome
Transcript
Level		FPKM:6.73 TPM:6.59
ORF EntryO_TrvaFAMAMG24597_complete:A_TrvaFAMAMG_TR21626c0_g1_i1
Sequence
(Nucleotide)
TTTATTTTTTCATAATTTTATTTTGAAACGCTATAAAAGCTTTCTAATCGATAAGGAATC
AGTTAGTTTATAAGGAAATGAAAATAAGTAGGTTTTAAAAACCACTTAAAATGTCAGATC
CTGAAGAAAACGTGCATCGTTTGGAGGGAACTTCTGGCGATGCTCCCGGCGGTCTAATCA
TCAAGAAAAAGGATAAACCACCAGATATCCAGTTTGCAAAACCTTCTTTATTAGGTCTAG
ATAAGTTAGCGGCCGCGAAACGTAAACAAAACCGGTTAATTTCGTTCCAAACTGAAGATA
ATGAGGACGAAGGCACCAGTGCTGAAAACGAAGTGAAAGAACGTAAATATAGGAAACACA
ATGAAGAAACACCAACTTACACTGGTGGAATATCGGAGCAGGCGCGGGAGAGGATCATAG
AGAGGATGCAGAAAAAAGAAAAGCAAGCTAAAGAAAAAGGAGTGCACAATTCAACTCAAG
AGGAAAAGAAAACTCGGTCTCGTGAAGATGATGACTACTACCGTCGATACGATAGAAGAG
ATCGTAGAAAAGATGACTATAGGAGAGACAGGGACAGAGGAAGGAGGGACAGAGATGAAG
ATAAAAGAGAAAGAGATAGATATGACAGGGATAGAAGAGATCGTGACAGTGAAAGGAGTA
GTTCCAGACGAAGTTATTATAATCCTAAATTTAAAGATGAACCGAGAACTCCCAGTATAA
GTGCTCTAAAACCTACCGAAAAAACTGCCTGGGATGATGATGATGACGACCCCAAGTCAA
CTGTTCGTAAATCAAGTTGGGACTTTCCTACACCTCTTACCAGAGATTACGATCAACGTA
GCGAGAGAGGGAATCGTACTATGAGGGATTATAAGGGCAGAGCATATGAAAATACACCTA
GAGCAACACCGCATAAGTTTGCCAGTTCTCGTAGACTGGTAGATGTTGATGATCCTGATT
GGCAAGAAGCTGAGAAAAAACTAGACAGAGATTGGTACAACATGGGTGAAGGTGAGGCAG
ACGAATCAGATCCATTTGGGAACACGAGCGAAGAGTACATAGCTCGCAAAGAGGAACAGA
TAGAGAAACGACGGAACCGGAAAGTCTCTGCGCAGAGACAACAGATAGATAAAGATAATG
ATCTGTGGGAGCGAAACAGAATGTTGACCAGTGGCGTTGTACACTCTATCAATGTTAACA
ATGATATGGATGAGGAAAATGTGGATCGTGTGCATTTGTTAGTTCATAACATAGTACCAC
CGTTCCTTGATGGAAGAATTATATTTACTAAGCAACCGGAACCCGTTATTCCTGTAAAAG
ATCCAACATCAGACATGGCCATGAACGCTCGGAAAGGCTCGGCTCTGGTCAAAGCGTTTA
GAGAACAGAAAGAGAGGCGGAAGGCGCAGAAGAAACATTGGAAATTAGAGGGAACTAAAC
TTGGTAATATAATGGGAATACAGAAAGAGAAAGAAGAATTAGAAGACGGACCGACAAGAG
AAGCTTATAAATACGCAGAACACTTAGATAAAGAAGCCCAAGAGCCGGAATCTAAGTCAG
ATTTCGTCAAGAAAATGACGATATCAGAGCAAAGAAGGTACCTACCCGTGTTCGCTGTAA
GAGAAGAACTTTTACAAGTTATCAGAGAAAACAACGTTGTTATTATTGTTGGTGAGACAG
GGAGCGGTAAGACGACCCAACTGACACAGTATCTGCACGAGGAGGGGTTCAGTAAGCTCG
GCACTATAGGCTGCACGCAGCCGAGGCGCGTCGCCGCCATGTCTGTCGCCAAACGAGTCT
CAGACGAGATGCACACCAAGCTAGGCGACGAAGTGGGCTACGCGATTCGTTTCGAAGACT
GCACATCACCAAATACAGTCATCAAATACATGACAGATGGTATCTTATTACGAGAAGGCC
TGAGAGAACCGGATCTCGATAATTACTCGGCTATCATCATGGACGAAGCTCACGAACGGT
CACTGTCCACTGATATGCTGTTCGGACTGTTAAGAGAGGTGGTAGCCCGTCGTTCTGACC
TGAAACTGATCGTCACCTCAGCGACAATGGACTCGACAAAGTTCTCAACGTTCTTCGGAA
ATGTACCAACGTTCACGATTCCTGGACGGACCTTCCCAGTCGAGACGTTTTTCTCGAAGA
ATCCTTGCGAGGATTACGTTGATGGTGCTGTTAAACAGGCGCTTCAAATACATCTGCAGC
CGGAAGAAGGAGACATTTTAATATTTATGCCCGGCCAGGAAGACATTGAAGTTACTTGTG
AGGTGTTAACAGAAAGACTGACTGATCTCGACAACGCTCCGCCATTAACAGTGTTACCCA
TATACTCGCAACTACCCGCAGATTTGCAAGCTAAGATCTTTCAAAGGGCTCCACCGGGTC
AAAGAAAATGCATTGTGGCTACTAACATAGCAGAAACATCGCTAACTGTAGACGGTATAA
TGTACGTCATAGATTGTGGATACTGCAAACTTAAGGTTTACAATCCGAGGATCGGTATGG
ACGCTTTGCAGATCTACCCAGTGAGCCAAGCCAACGCACGTCAACGGGCAGGTCGGGCGG
GCCGAACGGGGCCCGGCAAGGCGTACTGCCTCTACACACAGCGCCAGTACTCGCACGAGC
TACTCGCCTCCACCGTGCCCGAGATACAGCGCACCAACCTCGCCAACACCGTGCTGCTGC
TCAAGTCGCTCGGCGTCGAGGACCTGCTGGCCTTCCACTTCATGGATCCCCCGCCGCAGG
ACACGATCCTCAACTCCATGTACCAGCTCTGGATCCTGGGTGCCCTGGACGGCACGGGTG
CTCTGACGGCGCTGGGTCGACAGATGGCGGAGTTCCCGCTGGACCCGGCGCAGTGCCACA
TGCTCATAGTGTCCGCCGAGATGGGGTGTAGCGCTGAAGTACTTATTATTGTATCGATGC
TGTCAGTACCATCAGTGTTCTATCGTCCTCAAGGCAGGGAGGAAGAGGCAGATGCCGTCA
AAGAGAAGTTCCAAGTGCCAGAATCGGACCATCTTACTTTACTACATTTGTACAACCAGT
GGAAGTCTAACAATTACTCAAGTCAATGGTGTACCGAGCACTTCGTTCACGCAAAAGCTA
TGAGAAAAGTACGAGAGGTCAGACAACAGCTAAAAGACATTCTGCAACAGCAACGGTTAC
CGTTAGTGTCGTGTGGAACAGACTGGGACACTGTCAGGAAATGTATCTGCTCAGCGTACT
TCCAGCAGGCGGCGCGGCTGAAGGGTATCGGCGAGTACGTGAACTGCCGCACGGGCATGC
CGTGTCACCTGCACCCCACGTCGGCGCTGTTCGGCCTGGGCTGCAGTCCGGACTACGTGG
TGTACCACGAGCTGACGATGACGGCGCGCGAGTACATGCACTGCGTCACGGCGGTGGACG
CGCGCTGGCTTGCTGAGCTCGGACCCATGTTCTTCTCCGTCAAGGAGACCGGCAAATCGA
ATCGAGACAAGCGTAAAGAAGCAGCTGTCCATTTACAACGTATGGAGGAAGAAATGAAAG
AAGCCGAAGCCAAAATGGCGGAAGACAGAAAGAAAAAGCAAGAAGATGTACCCGTTAAAC
AAGAGATTGCTACTCCCGGACTCAACACGCCTCGGAGGACTCCACAGAGACTTGGATTAT
AACCTTTTTACGCAACAATACGCCGCCATTTTGTATCAACAACAAAATGGCCGCTGACTT
TTAACAATTAGTTTGAAAGAACTTCTACATCAGTCGAACAATATTACTACAACAGTAACT
ATTGCTCAATTCTAGATACGAGAATAATTAAACAAATATAAGAACTGTAAATTCCTTTAA
CAGAAAAGTAACTTTGGAAATAGATAAATCAAAATTCAATTGGAACGTAAATTATTTTTC
CTGTTATCATAAGACTAAACAAGTATTATCAGCGAAAGATATTTAAATATCTTAACAACA
ATAAACATATAAAACAATAAAAAAAAAAAA
(3990 bp)

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