SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR20954c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_exosome_complex_component_RRP41_[Amyelois_transitella]
Ontology
GO:0000175 F 3'-5'-exoribonuclease activity
GO:0000176 C nuclear exosome (RNase complex)
GO:0000177 C cytoplasmic exosome (RNase complex)
GO:0000178 C exosome (RNase complex)
GO:0000460 P maturation of 5.8S rRNA
GO:0000956 P nuclear-transcribed mRNA catabolic process
GO:0003723 F RNA binding
GO:0004532 F exoribonuclease activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0006364 P rRNA processing
GO:0016075 P rRNA catabolic process
GO:0017091 F mRNA 3'-UTR AU-rich region binding
GO:0030307 P positive regulation of cell growth
GO:0031125 P rRNA 3'-end processing
GO:0034427 P nuclear-transcribed mRNA catabolic process, exonucleolytic, 3'-5'
GO:0034475 P U4 snRNA 3'-end processing
GO:0035327 C euchromatin
GO:0043488 P regulation of mRNA stability
GO:0043928 P exonucleolytic catabolism of deadenylated mRNA
GO:0045006 P DNA deamination
GO:0051607 P defense response to virus
GO:0071028 P nuclear mRNA surveillance
GO:0071044 P histone mRNA catabolic process
GO:0071051 P polyadenylation-dependent snoRNA 3'-end processing
GO:0090503 P RNA phosphodiester bond hydrolysis, exonucleolytic
Transcript
Level		FPKM:9.23 TPM:9.04
ORF EntryO_TrvaFAMAMG24253_complete:A_TrvaFAMAMG_TR20954c0_g1_i1
Sequence
(Nucleotide)
AAAAAAAAAAAAAAAAAAATACATACATAAATAAATACATAACCTATAAATTCCCAAGTT
TACGCGACTTTAAAATCACAATTACAATTGTACAGTAATCAGTGAATTGCACAAAAAAAT
AACCACTAAAGAGAATTAACAATTGCATTGAAGAACAAAACTTCAGTAATAAAAGAAACA
AACTCAGCCACTGATGCGTTTTCAAAACGAGACCACCTGGTTTTGATTTATAAATAGTGA
AAAAGTCGAGTTTTACTTCAATTTCCATTAAAGATGCCTGCTCCAGATTTACTGTCGAGT
CAGGGGCTACGTCTAGATGGACGTAGACCGAATGAATTACGAAGAATACGATGCAAACTT
GGTGTTTTTACGCAGCCTGATGGAAGCGCGTATCTCGAACAAGGAAACACTAAAGTCCTT
GCTGCGGTCTATGGACCTCATCAAGCTGCAAAATCAAAAATGTTAGCAGAGGCTGTTGTT
GTTAACTGTCAGTACAGCATGGCTACATTCTCAACAGGCGAACGAAAGAACAGACCTCGT
GGTGATAGAAAATCACAGGAAATATCAATGCATCTACGACAAGCCCTAACAGCTGCTATC
AAAACAGAAATGTACCCTAGATCACAGATTGATATTTACATTGAAGTGTTACAGGCAGAC
GGCGGCGCGTACTGTGCGAGTGTAAACGCAGCGTGTCTAGCGCTGATCGACGCGGGCATT
CCTCTGCGCGCGTACGTGACCGCGTGCTCGGCGTCATTAGCGCGGCGTAGTGCGACGCAC
GAACCACTTGTCGATGTAGGACATGTGGAGGAGGCGGCTGACGGCGTGTGTTTGACTGTT
GCTAGTTTACCTAGTACTGGAAGCATAGCATTGTTGGAAATGTCGAATCGTCTTCACATG
GATCATTTTGATGTCGTTTTAACCAGAGCTATGCAAGGTTGTCGAGATATTGAGGTAATT
TTGGACAGATCAGTGAGACAACATTTAGCAGAAGGATGGACGAAATCAGACGCTGTTACA
ATATAGAATTACAATAATATTATGAAAAAAAATACATTAGTACCAGAGAAAATAGACAAT
TTGTTGTTTAAAAGTTGATTGTTGAGTTTGAGTTGTTTAAAAGACCAAAAAAA
(1133 bp)

- SilkBase 1999-2023 -