SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR20900c0_g2_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_LIM_and_SH3_domain_protein_Lasp_isoform_X4_[Papilio_polytes]
Ontology
GO:0003779 F actin binding
GO:0005515 F protein binding
GO:0005829 C cytosol
GO:0005925 C focal adhesion
GO:0007279 P pole cell formation
GO:0007283 P spermatogenesis
GO:0007291 P sperm individualization
GO:0008270 F zinc ion binding
GO:0014881 P regulation of myofibril size
GO:0015629 C actin cytoskeleton
GO:0030018 C Z disc
GO:0031672 C A band
GO:0045214 P sarcomere organization
GO:0045856 P positive regulation of pole plasm oskar mRNA localization
GO:0046872 F metal ion binding
GO:0070864 C sperm individualization complex
GO:0071689 P muscle thin filament assembly
Transcript
Level		FPKM:13.15 TPM:12.89
ORF EntryO_TrvaFAMAMG24203_complete:A_TrvaFAMAMG_TR20900c0_g2_i1
Sequence
(Nucleotide)
GCATTTGTCATTTTTTGGCATGCGCGTACGGGGATGCTACGAAAATCGTGCTCCGGAGTG
TTTCTCAATAAAAGTTGTTTCTAAACTTTATTTGTGAATCGTGATAGTTGTGTTGCTCTG
TGAGGCTGTCGTGCCGTTGTTCAATTAAAGTGTTACTGTGTGAAAAACATTCAAGATGAA
TAAAACTTGCGCGAGGTGCGAGAAAACAGTTTATCCGACAGAGGAGTTGAAATGTTTGGA
CAAGGTCTGGCACAAGGGCTGCTTCAAATGTCAAGAATGTGGTATGACGTTAAATATGAG
GACATACAAGGGCTACGGGAAGCTACCATACTGCGAAGCCCACGTGCCCAAAGCGAAGCC
GACGACAATGGCGGAGACGCCGGAACTGAAACGGATAGCCGAAAACACGAAGTTACAGAG
CAACGTCAAGTACCACGCCGACTTTGAGAAGAGTAAAGGAAAATTCACTCAGGTGGCTGA
TGACCCAGAAACCCTGAGGATCAAAGCCAACACAAAGATCATCAGTAACGTGGCTTACCA
CGGCGAGCTTGAGAAGAAGGCTCAGATGGAAAGACAGAGACAGATCAACGAGAACGGAGA
GATTGTCGGAAGCAATCATCAGAGCCAACAACAATCCAGGCAGATAGGTCGTGTCACAGA
TCTAGACCCACTTGCCAACGAGGTGCCAAGACCTGCCACATCACAGAATCAGCGAGTCTA
CATAGCGATGTACGATTACGAAGCGAACGATAGCGACGAAGTGTCATTCCGCGAAGGTGA
TCTGATAACCAACGTGAGTTCTATAGACGAGGGCTGGATGACGGGGCAGGTGGTCCGCAC
CGGCCGCGCGGGCATGCTGCCAGCCAACTACGTCGAGACCGCGCCCGCACACGCACTGGC
GCACCACTGAACTAATTTACAGGTGATAGTGGCGTGCGATCCACAGAGACATACCCTAGC
TTGCGAAATTTTACTAAAATAATAACAAAAATCGTATAAATGCGGTATTTTATATCGATA
TATATGCAATAAAATAGATTGTATGTTCGTCATTTCTGCACACCACTGAATCCAACTTTC
AATGTCAGGGTATGCAGGAATGTAAATAAAACTTAATCTTTTGAAAATTTACAGCTTAAA
ATCAATTTTATACTCAATACACGCAGATAATAGCCATGATTCTCAATTAAATTTACAGTA
TTTAATCGATTTTTTTTATTCAACGTGTTTGACAGGTTAGATTATGCAATGCTTATTTGC
TTCTATGGACTGCACGCCTCAGGTGGATCTGTAACTGTATATCAGCTGTGGGGTGAATGA
CCTATCG
(1327 bp)

- SilkBase 1999-2023 -