SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR20794c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_transcription_initiation_factor_IIA_subunit_1_[Amyelois_transitella]
Ontology
GO:0001094 F TFIID-class transcription factor complex binding
GO:0001128 F obsolete RNA polymerase II transcription coactivator activity involved in preinitiation complex assembly
GO:0001129 F obsolete RNA polymerase II transcription factor activity, TBP-class protein binding, involved in preinitiation complex assembly
GO:0005634 C nucleus
GO:0005672 C transcription factor TFIIA complex
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006367 P transcription initiation from RNA polymerase II promoter
GO:0017025 F TBP-class protein binding
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0051123 P RNA polymerase II preinitiation complex assembly
Transcript
Level		FPKM:18.76 TPM:18.38
ORF EntryO_TrvaFAMAMG24122_complete:A_TrvaFAMAMG_TR20794c0_g1_i1
Sequence
(Nucleotide)
GTTATGTTTGAGTAGACAATTGTCAAAATTTTTGAGCTGATTTTGTGGTATTAGAAGAAT
CTTTTATAGTAAATGGGCATGATCGCTGTTGAAACAATTAACTTATGTAAAAATTAAATA
GAAAAATTGAACACAATATCAGTGTATTATCCTATAGTGTGAATCAAGAAATTTGACATT
GAATTGTTGAGATGTGAACTAAGAAGTCTGGTAATCGGTTTCAATCAATATTCTGATTTA
AAAACTAAAATATATGGTTAAAGAGAAATCTAAACTGGCACAAGGTTATTTCAACTTCAG
TGTGACGGCAAAATGGCATCCAGTCAAGTAACAGTGTTGAAACTTTACACCGCAGTTGTA
GATGACGTTATATCAGGAGTAAGAAACTCTTTTTTAGACGACGGAGTAGATGAACAAGTT
TTGCAAGAATTGAAACAACTATGGAAGACAAAACTTCAAGCCAGCGGAGCCATGGACGCG
TTACAACCCGAACCAATGCTTCCACCGCCACCAGTCCTTCAAAATTATCACAAAGCAAAC
GGCAGTAATGTAGTGCACAAAAGGACTGATATGGGACACACGTCAAGCCAGTCTGATCAT
AGTACACCAGCATCCAATGTAGCTGGAACTCATGCTCATCACATCATAGATCCAAATAAT
AAAGTTCCAGTTCAACTAACACTACCAGCTCAGCCCGGAGTCCCTGGATCTCAACCACGT
TCCTTCACTATACAAATTCCAGCATCTGCACTGAATGGTAATAAATTGCATCAAGTTCTG
ACAGGACCTATTATAAATGCTACTATAAGCCTTCCACAACCTTTGGCTGCAACATTGTTA
CAACAGCACATAAATTCTGCTTTAGCAGGTCAACAAAGTGAATTTGATAGCGGTGGAGGT
GGTCGCAGTGGGGCTGCACCTTTCTCTTTGGACGGTGCTTTAGATTCTTCTGATGATGAC
GGCTCAAATAATGGTGACGGATCAGAGGATGGTGCCGGAGATGATGACGATGATGATGAT
TCTCCTGAGGAGCGGGCTGAGGAGGAAGAGGAAGAGCAGAATGAAAGTGGTGGTGCTGAA
GAAGAACCCCTAAACTCTGGTGATGATGTGTCTGATGAAGAGCCAGGAGATATGTTTGAT
ACCGACAATGTTGTTGTCTGTCAATATGATAAAATCACTCGCAGTCGTAACCGGTGGAAG
TTTTACCTTAAAGACGGCATTATGAATCTAGCAGGCAAAGATTATGTATTCCAAAAAGCC
AATGGTGATGCAGAATGGTGAACTTTTAGTGTATTTCATAGAAACTAATTTGTTATAATA
TATTTTAACTTAATGGGTATTACTAATTTACAAAAAATGGTGGCAAACAGTTTGTGATCC
GAAGTATTTTCAATAAAACTGCCCTTTACTTGAAATACTATTATAATTAAACTTGTTTTG
TGACACTGTTTTTGTTTCATAAAACTGATTATACAGTTTATTTTCCTAAGAATAATATGA
TCTTTTATGATGATATCTATCCGTTTCTTAATCACATTACATTACTTAGATATATAATTT
CTTCAATAAAATACCATCCTTGATAGGTGTACATCAAATTT
(1601 bp)

- SilkBase 1999-2023 -