SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR20138c1_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		pleiohomeotic_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000400 F four-way junction DNA binding
GO:0000724 P double-strand break repair via homologous recombination
GO:0001078 F DNA-binding transcription repressor activity, RNA polymerase II-specific
GO:0001158 F cis-regulatory region sequence-specific DNA binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003713 F transcription coactivator activity
GO:0003714 F transcription corepressor activity
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0006281 P DNA repair
GO:0006310 P DNA recombination
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006974 P cellular response to DNA damage stimulus
GO:0007283 P spermatogenesis
GO:0008270 F zinc ion binding
GO:0010225 P response to UV-C
GO:0010629 P negative regulation of gene expression
GO:0016363 C nuclear matrix
GO:0030154 P cell differentiation
GO:0031011 C Ino80 complex
GO:0034644 P cellular response to UV
GO:0044212 F transcription cis-regulatory region binding
GO:0046332 F SMAD binding
GO:0046872 F metal ion binding
Transcript
Level		FPKM:6.78 TPM:6.65
ORF EntryO_TrvaFAMAMG23787_complete:A_TrvaFAMAMG_TR20138c1_g1_i1
Sequence
(Nucleotide)
AAAATGGACGCCTCTCTTTGGGGAGAGTCGTCGAACGCGAGTGGCTGTAAGAGAGGCGTC
CATTTTGCTGCGCCATATTGAATTTGGTCGGACATCTTTGGACGCCATGTTTAGTCGGAC
ATATTTTATAAACATTTTCGCGTAAATTTCAAATATTTTTGAGCCGAAATAGCGAACTTT
TTTTCAGTGAAAACTGTGGTTTCGTTTGTCGTAAGAAAAACATCAGAAAGTTAAGTGCCA
ACGCGTCCGTGCATAATCGTCTCCTGGGGTCTGGCGGAGCTTTTGTTACAAGATAAATAA
AGGATTCCATCAAAATGATGAACCAGGAGATTATGTGTGAGGTGGAGATAGGCACCCACG
GAGGCATTGAAATAGATGATGAGAATCAAGTTGGAGTCAAGTATGAAGAGATAGAGACAG
GTCAATACGAGGAGTACATCACGGATGACCAGTACGAAGAAGTTGAAGAACAAGTTATCG
GTATGCAGCATTTAGAAGAAATCGGAAGTGAAGAGGTGGTACTTCCCGGTATTTCCGGCG
AGGAAGTACTGACTGCGCCCTGTGAGAATCCATACGGGACTTTGTACGCGGATTCCGTAT
CTACAACTAACAGAAGCCGCAACAGAACAAAATCGAATAATATGTCTAATAATATACAGC
ATTTAATGCCTATCGGCGAAGTCCCAATGGGTCTGATGGAAACTGTGGGCAATGCCAGAG
CTCCGACACGCAAATGGGAACAGAAGAAGGTCCAGATCAGGACCATGGAGGGAGAGTTCT
CTGTCACTATGTGGGCGACGGGAGAAGATGACGATGAAACTTCGAATCCGGAGCCAGATC
CTGACTATACAGAGTATATGACGGGAAAGAAGAATATACTAGGAAATGAATCTATGCCGG
GTTTAGACTTGTCAGATCCGAAGCAGTTGGCTGAATTTGCTCGTCCCGGACACAAGATTA
GACTGAAGAAACCTTCACCGGAAACATCAGATAGAACCATAGCTTGCCCACACAAAGGAT
GTACAAAAATGTTCCGCGACAACTCTGCCATGAGGAAACATCTCCACACGCACGGACCCA
GAGTTCACGTGTGCGCTGAGTGTGGTAAAGCCTTCGTAGAAAGTTCAAAATTAAAAAGAC
ATCAGCTAGTACACACGGGAGAGAAGCCATTTCAATGTACTTTCGAAGGATGCGGGAAAC
GATTCTCTTTAGATTTCAATTTACGAACCCACGTCCGGATCCACACCGGCGACCGTCCCT
ACGTGTGTCCGTTCGACGGATGCAACAAGAAGTTCGCGCAGAGCACCAACCTGAAGTCAC
ATATACTTACACACGCGAAGGCGAAATCAAGAAATTCTCTATCAAGAAACGGAAATAATT
CGTACGAATCAGCTCGAACTACGCCACAATTTGTACAACTAGAAATGTCCCCGGACGATT
CTAATCCACAACTAGTGTTTTATACTCATGAATGAATTACGAATCTTGAAGAACTAGGCA
CTGTTGGACAAACATTGGGACAAATGTTGGCTGAATAGACCGATGAAGAAAAGTTGGTCA
AATAGTGTGATAGCCAATGATGGCCAATAATTTGGTGTTTTTTGGTAAATGTTGTCAAGT
ATAAAATATAATTGTGAAAGGACTCATAAACTACTTTTAGTAGATTATTTTTTTGAGTGA
ACCGATTTTAATGTCTTGAAAGCTGGTGCTTTTAATTTGATCACTGAGTTGCAATTTTTG
AGTATCCTTAATATTTTTTTTTTAGTTCGAAAAGGACTATACAGAGTGATTTGTTAATGA
TGGTATGTATTGAAGGAGGGTGATAAGTACTCTGTTCTACGGAATATAACAAAATAGGTA
CATAAAATTCGCCACATACAGACATCAGCGATAGTAAGACAATCTTAACGCACAAATTTA
CGATATATTTAAGTTGCGTTTACTAAGATATACCATATTTGGTTATAATATTGTTACTGT
TGACCATCAACTATCATGATCTTCATTATTAATAAACTACTCTGTATACAGGGTGGTTTG
GACAATCTGACGTGGGGTGAATGACCTGTCGAAATGAAACTTGGAACCACTTATAT
(2096 bp)

- SilkBase 1999-2023 -