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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR20111c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		DNA_ligase_3_[Papilio_xuthus]
Ontology
GO:0000166 F nucleotide binding
GO:0000794 C condensed nuclear chromosome
GO:0000795 C synaptonemal complex
GO:0003677 F DNA binding
GO:0003909 F DNA ligase activity
GO:0003910 F DNA ligase (ATP) activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005739 C mitochondrion
GO:0006260 P DNA replication
GO:0006266 P DNA ligation
GO:0006273 P lagging strand elongation
GO:0006281 P DNA repair
GO:0006288 P base-excision repair, DNA ligation
GO:0006302 P double-strand break repair
GO:0006303 P double-strand break repair via nonhomologous end joining
GO:0006310 P DNA recombination
GO:0006974 P cellular response to DNA damage stimulus
GO:0007005 P mitochondrion organization
GO:0007049 P cell cycle
GO:0008270 F zinc ion binding
GO:0016874 F ligase activity
GO:0043504 P mitochondrial DNA repair
GO:0045910 P negative regulation of DNA recombination
GO:0046872 F metal ion binding
GO:0051103 P DNA ligation involved in DNA repair
GO:0051301 P cell division
GO:0070421 C DNA ligase III-XRCC1 complex
GO:0071897 P DNA biosynthetic process
GO:0090298 P negative regulation of mitochondrial DNA replication
GO:0097681 P double-strand break repair via alternative nonhomologous end joining
Transcript
Level		FPKM:3.95 TPM:3.87
ORF EntryO_TrvaFAMAMG23690_3prime_partial:A_TrvaFAMAMG_TR20111c0_g1_i1
Sequence
(Nucleotide)
ATTTTTCCTGTTTATTTATTCCATAATAATTATATTTTTAATTCATCTTGTTGATTGAAT
ATGTAACTAAAATATAAAAACAATATCGGTGTAGCTAATGGGTGTAATTCTATGGTTACT
TCCAGTCAGCGCGCTGCAACCAAATACAGTTTTCTATGTAGTGCAGTTTGATTGTAATAT
TATTTTTACCAGATGTTTGGACAATAAATACGACATTAAATACACTGTGAATAAGAGAAC
AATGAAGTAATTTTTAGTGAAAGGAATGCAATATTTGAGTGTGCTATAGCACAATTAATG
AATCAATATGACTGATTCAACACCATTCTTCGTTGACCGCGCCAAAGGCGGTCGAGCATC
GTGTAAATTGTGCAAAAACAACTGCCCCAGTGGTGAATTGCGTCTTGCCAAGCTAGTACC
GAGTCCGTATGGCGAGAACTTAATGAAATCTTGGTATCATGTCCATTGCTTCATGGATGT
ACTGTTAAAACAGCGCCCTAACACAAAACGAGTGGAAAGTATCGATGACATAGGTAACTG
GGATAATATAAGCAAAGGTGATCAAGAACTCATCTTAAAAAAGTTAAATGAAACTGAAAA
ATTATATGCGGAAAAGAACAGTGGCAAGTATGTTGCTAAAGTGATTAAGAATGAATCCTT
GGGTCCTAAAATCCAACCCAAAGATGAAGACCCTGATATCACAGATTCAAATGCCAATGA
AGAAGACAATAAATTCAGTACTTTTATCAATTTATGCAATAGAATTGCCAAAGTTGATGC
ATATACTGAGAAAACTGCAACTGTTAATAAATTCTTCACTAAAGGCTCGGATAAAACATC
TTTTAAAGGAGATTTAGCATTGTGGTGTAAGTTATTGCTACCGCAAGTAACAAAGCGAGT
TTACAATCTAAAAAGCAAACAGCTTGTTAAATTGTTATCAAGAATATTCAGTACTGACCA
TGATGATATGTTGACTGATCTTGAACAGGGTGATGTTGCTAATACCATACAAAAATTCTT
CTCAAAGTCAAAGACAATACAACCAGCCTCTCAGAGCTCACTATCAATACACAACATAGA
AGACTTCTTAGAAGATTTGTCAAAATTAACAAAAGAAGATGAGCAAATTTATCATTTCAA
AAAGATTGTCAAGAAATGTACATTAGATGACATGAAAATGTTGATAAGGTTGATAAAAGG
CGATTTAAGAATCAATGCTGGTCCTAAACATGTTTTAGAAGGAGTTCATCCAGACGCTTA
TAGTGTTTTTCAAACCTCAAGGGATCTGAACATGGTCTTAGACAGAGTTCTTTCAAAGAA
TAATAGTTCTAATGACAAGGGAGTAAAACTCAAAGCAGTTTCAGCAAAATTGACATTAAT
GACTCCAGTATTACCAATGTTAGCTGAAGCATGCAAATCAATTGAAATGGCAATGAAAAA
ATGCCCAAATGGAATGTATTCCGAAATCAAATATGACGGAGAGAGAGTTCAGATACACAA
ACAAGGTAATGACTTCAAATACTTTTCCAGGGCATTAAAACCTGTTATGGCACACAAAGT
GAGCCTTTTTAAAGAATATTTACCGAAAGCATTTCCTAAAGGAGAAGACATGATCTTAGA
TGCAGAAGTGTTAATGGTAGATGTTAATACCGGAAAACCACTACCATTTGGTACATTAGG
TAAACACAAGCAATCAGAATTCAAAGATGCAGAAGTATGCTTGTTTATTTTCGACTGTCT
TTATTACAACGGTGATGTGCTGATGAATGAACCAATTTGGAAACGAAAAAAGTTCCTCGA
AGAAAATATGATTGAAGTGAAAAATCATGTCATGTTGTCAGAATTGCAGTTCATTGAAAA
ACCGTCTGATTTGGCTAAAATGATTGCTGAGGTTTTACAACTTGGTCTTGAAGGATTAGT
TTTAAAGGACAAAGAATCAACATATGAACCAGGAAAACGTCATTGGTTGAAAGTGAAAAA
GGATTATCTATTTGATGGTGCGATGGCAGATACTGCAGATTTAGTCGTTTTGGGTGCATG
GTTTGGAACTGGCAAAAAAGGAGGAATGATGTCCGTATTTCTGATGGGTTGCTTGGATAC
GCACAGAAATAAATGGGTAACAGTTACGAAAGTACATGGTGGTCACGATGACAGTACTTT
GGAGAGATTGCAGAAAGAACTAGGTCCACTGATGTTGAAGATATCACAGGATAGTTATAA
AGTTCCTTCCTGGTTGGACTGTAATAAAGGAATGGTGCCAGATTTCATTGCTTTGGATCC
AAAGAAGCAACCCGTTTGGGAAATTACAGGTACTGAACTGACAAAAGCAAACCAGCATAC
AGCCGACGGTATTTCAGTGAGATTCCCCAGAGTAACGAGAATAAGGACTGACAAAGATTG
GCAATCAGCTACCAACTTAGATGAACTGAAACATTTATACAAAACA
(2446 bp)

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