SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR20107c0_g1_i5
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_RNF146-B_isoform_X2_[Amyelois_transitella]
Ontology
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0008270 F zinc ion binding
GO:0016055 P Wnt signaling pathway
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0042787 P ubiquitin-dependent protein catabolic process
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0070936 P protein K48-linked ubiquitination
GO:0072572 F poly-ADP-D-ribose binding
GO:0090263 P positive regulation of canonical Wnt signaling pathway
Transcript
Level		FPKM:0.34 TPM:0.34
ORF EntryO_TrvaFAMAMG23679_complete:A_TrvaFAMAMG_TR20107c0_g1_i5
Sequence
(Nucleotide)
CAGCATTTAATCGATATACACCACCACAGACCATACATATATATATGAGAATATACACTG
TGATTTTTAAACTTAACTTTATAAGTTAAGGTATGCAATGCTTATTTACTTATACGGACT
ACACGCAACTGCTATTACCTTAAACCTTTAAAGAAAATGATTTTAGTTTTTATTTCTATG
CGACTAGAATTCAGAAGAATGTTGAAAGTGCATTTAACATCGAGACACTAATTGGGCGAC
AAAGGTGTATCTACTTAAGGTATTGCAGTCTATAGTTGTTCGGTTTGACGAAAAGTCGAC
ATTGGATTTTTACAAAATTATCGATTGTGCAAAGGTTGCTTCCTTAAAATTGGCAGCAAT
TTTGAGTGCTGGATTCAGTTGTACACAACATATATGTATGGTCTGTGTACACAACCTCAC
ACGAACCGTCCATTCCTTCATATTCATCCATGCTTGTCATCTGTGGTTATCTGTCACTTG
TCATTTGTCAACTGACAGCTCAGTCCACAGATCAGAAAGTATCAAACTATTTATTTTACA
AAATATATTTCGTAGTGATAACATAGTTACTACTTCTATCAATAGTTGCCTCATTTTTGT
AATTATAAATTAAATATTGCATTCTTCTATCAGTACAATATTTCACTACTGGTTGTTGTG
AATAGACATAACCTAAAAGGTATTAATCGTTAAACTCTCTCCCAGCAAGCGGCTGCAGCC
AGTAATTTTCGTTAAGAAGTCAATATACAACGAAACGGCCTAGAGTTGATTTCCTTAATA
TGCAAAGAAGTTCATTATTTTAATAAATACAAATTGCACCTATTAGACTCCTTACTGATA
ATATTTATTTCAGTAATATGTGTATTACACCGTTTCAGGTAGAATGCTGAGGTTATTCTC
TCTGGTGAAAGCAGCAAATAGTTTAATTGGACAAAATGTAATGCCAGTAATTAATAAATT
GTATCAACCAACTATGACAACATGTCTAGTGAAGCCTGTGATTCCATCATTCACACAAGT
GTCAGGGATGAAGATAAAGGGACGTGTGAGGAGACGTTGCAAGTCTTGCTACTTCGTATT
TCGAGATGAAAGAGTTTATATAATGTGTCCAAAATTTCCAAGACACAAACAGATGTCCAT
GAAACCAAAACCGCACAATACATGGATACTCACTCACGCTAGCCAAAGCCCTGTTAGACC
CTGGTGATGTTGATAGATGATATTACTGTTTATTTTATCTTGATTATTAGAAAATAATAA
AGATTTACTGAAGTAGGGACTTGATTATTATTCCTATACTTTTTAATACCTATGTTTCAT
CTACTACTCCTCTCTCTGAATCGGTATCATTGATGGCTATAGCGCTTATTAGAGAAATCA
CATCATCAACATCGTGAGATTGAGCTGATGACATATTTTGATTTAAAATATGATCAGATT
CATGATTATTTTGAGAATCTTCTTCTGTTGTATTTATTGTATCAGTCTCTGTACTTTCAT
GATTGTCATTTATATTGTCCTCACTCTCATCTTTTACTTCTAAAGCCTCTGGACTACAAT
CGGTTCTTATACCAGCTATTCCTTTTGCTGGTAATCGAGGAGTGTCTCTTTGAACACGCC
GTCTACGGGTTTGGTCACTTCTTCGGTATTGTGTCATGGCTTGGAAATCAACTACGTACA
AAGCTCCAGCTAATAATAAAGTACAATCCGTTTCTCTGTTATTATAAGCATTTTCTAGTT
CCAAATTACTACGTTCATCATATTTCCACCAACCTAAACAAAATTATTTCTTAAATAAAG
AAAGTAATTATTTTTTAACTCAATATAAAGTTTTCTCACCATTTCTACCCTCATAGTACC
ATTGAAAGACGTCTCCATCAACATTATCAGAACATTCAAGAATAGGTTTGTCCAATAAAA
TAGGATTATCAAAATAATCCAAAGGAATATCACTACGACACATTGCACATTTTCTGCTTT
GATAAGCTACTCCCTTGACACAGAGAAAACAGAAGATATGACCACAAGGTAGTTGGGTAG
GGTGTTGACATTTTTGCAAACAAACCGCACAATCGTAGTGTTCCATATTATCTGTGTTTT
CCTTTTTCCTTGTTTGTGTAGTATACCAGATTGTTTTTATTACTTAAAAACCTATCGTAT
CGAACAGTTTTATTTGTAATTTCCATGTAATTTGTTTGTGACCTACAAAAACCTAGAAAG
CCATAATTTTTTTTTTTTTTTTTTTTTTTTAAAAATCATAATTTTTTTTTTTTTTTTTT
(2279 bp)

- SilkBase 1999-2023 -