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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR19853c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_sorting_nexin_lst-4_[Papilio_polytes]
Ontology
GO:0005515 F protein binding
GO:0005547 F phosphatidylinositol-3,4,5-trisphosphate binding
GO:0005737 C cytoplasm
GO:0005768 C endosome
GO:0006886 P intracellular protein transport
GO:0007067 P mitotic cell cycle
GO:0008289 F lipid binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0019898 C extrinsic component of membrane
GO:0019902 F phosphatase binding
GO:0030670 C phagocytic vesicle membrane
GO:0031410 C cytoplasmic vesicle
GO:0035091 F phosphatidylinositol binding
GO:0043621 F protein self-association
GO:0045335 C phagocytic vesicle
GO:0051020 F GTPase binding
GO:0090386 P phagosome maturation involved in apoptotic cell clearance
GO:0090389 P phagosome-lysosome fusion involved in apoptotic cell clearance
Transcript
Level		FPKM:23.47 TPM:23.00
ORF EntryO_TrvaFAMAMG23423_5prime_partial:A_TrvaFAMAMG_TR19853c0_g1_i1
Sequence
(Nucleotide)
TTTTTTTTTTTTTTAACGAATTACATTATTTATTTGATTAGCAAGCCCTATACTACCTTA
CAAAAGTGGAATATAGTACAACAATTATAAAATATACAACAAAACATCTCAAAATAATTG
ATCCACAAATAGTATAAAATAAAAAATAGATTTATAATATAAGACATACCAGACGAAAAA
AGTACTTTTCATAGAAAATATTTACAAGTATTTCGTGATTTGTAAAAAAATGTAAATGTA
GATAAATATAGGATCATATTACAATATTATACTATAGTTAACATTCAATTTTAGATACCA
TCACATCATAAATTCATTCATAATATCCAGGCTCTTTAGTTGCATCTAATCCTTTGGATT
AAGTGATTAGAATATGACAATTCCAAAATGACATGACATGTATTAAGAGCATATAAAATG
TTCATAAGTTTTCATTACAGAACAGTAACCATTCTAAGTCTTCCATTTTTAAAAACTGCC
TGATTATAGGATGTTTGTTTTCAACATCAATATCTAAATGAATTAATCATCATAGTATCT
AAGAGTAGTTTCCAATTTATCAACAACTTTTTTGTAAAAATTGATTTGTTGCTTCAGGAA
TTTTTGCATTGTGATTTTTATATCAACAGTTCTTTCTGCTTTGAAATGGTTGATCTCGGC
AAGAAGCGCATAAGATATGACATCAGTCCTTCTCAGGACTTCATTTAGTTGTGCAACCTC
CATTTTGCTTTCAGCGGTCAGTCTTTCACACTCTCTTTTCTTCTGCACTGCAGCCTTGTG
GTTGGCAAGCACATCGGGGAAACTAGCTGTGATACCTTTGTACAAGTGGAATTTGTCACC
AAGAGGCTCCCAATCATATTTTGGTTGATCATCATACATTCTACCAATATCAATGTAAAC
TCCTCCAGTCATTTTGATAGCAGATGTCAGTTTTGAAGTTGATACTATGGTCCCTTCATC
CAAGCTTAATGCATTACCAAGACTATAAAATGCTTCCCCAACCTTCTGGCAGTCACTTTT
GTATTGTTGTTGGAATCTCTTTGTGAGGACAAGGCACATACCTGACACAGATTTAATGGC
CATATCAACACTACCAATAAAAGTGTGGCATTGTTCTGTGATATGATCAACTTGTGATTG
CAATAAAGCTTTCTCAGGTACAACTAGTGAAACACAATAATTTAGGCCAAGTAAATTGTC
TTTTTCAGCTTGCCTTTTGCCTGCCTTCCATCTTTTTTCATCGGTGCATGTTAAGAAATG
CTGCCACACTTCACATTTAGAGAGCACTGGGTGCTTACACATCCAATCTACGAATTCTTG
AAGCTGGACTCGTCTGCGTTCTATAAGCTGCTCATCGTACCTCCCAGATATCTGCTTGTC
AGGTAGAGGTGGTATGGGAATCAGTGTGAATTTCTCCTGTAATCTTTCATGTAACCAATC
AAAGTGTTTGTATCTCCTTGACACTTGTATGTTGTTGAATGATGGAGTCAGTTGGTAAGC
TATAAAACTTTTAATTCCTTTAAATTTTGATTCTTTCTTTGGAGAGGCCACAGTGACATT
GTATGGCTGAGTGATTGGTGACCAAATGTAGCCATCCTCATCTTGTATAATGTAAACCTT
CTCAGAGTCTGGCACTTCTACATTGAGTGTAGCTAACAGATAGCTTTCGCCACTTATTTT
TGAGGATGGAGCAAATTTGTTCTTTCTAACTGTGCCAACAGATGAGCCAAAATTGGATGA
TGTGTCATCTATGTGTGTATTGTAATCATTGATAGGCATTCCTGGAATGACTGGTTGTGG
TTGTTGGTTGTATTGGGATGTCTTCTGTTGATGAGCTGGTCCTATTTCAGAGTATGTGTC
ATCTTCCCAGTCATCATCCCAGCCATCTTCATGTGATACTCCTCTCTGGTAGTTGTTGTC
GCCAGCACTGTATGGTTGTTCACCCCAGTCATCGGCCGCCTGGTCGTACCTTGGAGCTGG
GGGTGCTGCTTTGGTTTGTACTGATTCTTCTGGTGTAAGTTTCCTGACATAGGCAGCAGG
GAATAGGCCAGTCTCTCCTTTAGAATTCCTGCCTTCCCACCACCCTTCTCCAATCTCTGT
GTTTAGCACTGTGAGTACTTCTCCACATGTGATAGACATCTCCGTGGTGCCAGGCTCACC
AGAGAAGTCGTACAATGCTTGTACTTGGGTCGTCATTTTTAGACCCGTACTGTTTTTCAC
TATAAAACGTAATTTCAAGGCGGATACACCGATTGTACAGTCATCTGTTTGACAATTGAC
AGCTTGACAAACCTTGTTTCCTTTTTCAATAAAATGTTCTTGAA
(2324 bp)

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