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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR19164c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_chromodomain-helicase-DNA-binding_protein_Mi-2_homolog_isoform_X2_[Amyelois_transitella]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000166 F nucleotide binding
GO:0003676 F nucleic acid binding
GO:0003677 F DNA binding
GO:0003678 F DNA helicase activity
GO:0003682 F chromatin binding
GO:0004003 F DNA helicase activity
GO:0004386 F helicase activity
GO:0005515 F protein binding
GO:0005524 F ATP binding
GO:0005634 C nucleus
GO:0005700 C polytene chromosome
GO:0005829 C cytosol
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007283 P spermatogenesis
GO:0007517 P muscle organ development
GO:0008026 F helicase activity
GO:0008270 F zinc ion binding
GO:0016581 C NuRD complex
GO:0016787 F hydrolase activity
GO:0016818 F hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides
GO:0016887 F ATP hydrolysis activity
GO:0031491 F nucleosome binding
GO:0032508 P DNA duplex unwinding
GO:0035327 C euchromatin
GO:0042766 P nucleosome mobilization
GO:0043044 P chromatin remodeling
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0046872 F metal ion binding
GO:0048813 P dendrite morphogenesis
GO:0051276 P chromosome organization
GO:0051312 P chromosome decondensation
GO:0070615 F ATP-dependent chromatin remodeler activity
GO:0071923 P negative regulation of cohesin loading
Transcript
Level		FPKM:27.39 TPM:26.83
ORF EntryO_TrvaFAMAMG22815_complete:A_TrvaFAMAMG_TR19164c0_g1_i1
Sequence
(Nucleotide)
GTGACGACTGACAGCGGCATCAATTTCTGAATTAATTACAATTTGTCGCAAAAACTGCGC
GTCCTTTATCTTTTCTACACAAAAATCTATCTTTTCAATACAGATTGTGTTCAACAGAGA
TCTAAATGGCATCAGATGAGGAAGTAGACGGTTCTTTTGCAGGTGACGAGGAAGTGGAAG
AAGGTGAGGGTCAAAATGATAATTCTGGAGACAGTGATGAAGCCCCACCAAAGGAAGATG
AAGATTATTCCCCAGAAGATGGCCGTAAAAAGAAAAAGGGAAAGAAAAGGAAAGCCAGAG
GAGAAGAGAAAAAAGGAAGAAAGAAAAAGAAGAAGCGAAAGAATGAAAGTGAAGATGATG
ATGACTTTGGCCTGGAAATGGAGGCTGAAGGTGACAGTGACTACGCACTGAGTGCGGTAT
CCTCGAGCAAGAAGTCTCGTAAGGGTCGCAGCAGCAAACACAACACACCGTCAACACCTG
CTGCATCTGATTCTGGCTGCGGTATGCCAACAGTGGAGGAGGTGTGCTCGTCATTCGGTC
TCACAGACGTAGACATACAGTACGTAGACGCAGACTATGAAAACTTGACCACATACAAAC
TGTTCCAACAGCATGTACGGCCGATGCTCGTCAAAGAAAACCCGAAGGTGCCAGTGTCAA
AACTAATGATGCTAGTCGCCGCGAAATGGCGTATGTTCTGTGAAACGAATCCACACCTAA
ACACCGCTGTACCTCAAAGCATGGGCTCCGAGGAGAACACAAACACTTCAACCACCTCTG
ACTACGTTCCTAAGAGACCGGGTCGCACGCCTAAAGAGACTAAGAACGACGAAACAATAG
AAGAGCCGGAAGAAGAAGAGGAAGAGGAAGCGAGTGACGAAGGCGCCACTATGCCTCGCA
AACGTGGACGCAAACCCAAGAACGCGGCCGCCGCCACCACGCCGCGGGGGAAGCCGGGAC
GGAAACCTAAAGTGCCCACGCTCAAGATCAAGTTCAGCAAACGGAAACGAACAAGCAGTG
AAGAAGAACACGAAGGCAGCGCCGTGAATTCAGACTCAGATGCAGAGTTTGAGCAAATGT
TGGCCGAAGCCGAGGAGACCAAACCTCCCGCCGCGCCCGCCGCCGAGGACGCCGCACCGC
CTAAAGAGGATGATCCTAATGTCACGGTACCCAAAAAGAAGGCAAAGACAAAAATAGGTA
ATAAATCTAAGAAGAAAAGGAAGTTGAAGACAACAAGTAAGTTTCCTGACGGAGCTGAGG
GTGAACATGAACACCAGGATTATTGTGAGGTATGTCAACAAGGCGGCGAGATAATCCTGT
GCGACACGTGTCCGCGCGCCTACCATCTCGTGTGTCTCGACCCCGAGCTCGAGGAGACGC
CCGAGGGACGCTGGTCCTGTCCGCACTGCGAGGCCGAACCCGCGCCCGACAACGATGATG
ATGACGAACATCAGGAGTTCTGCAGAATATGTAAAGACGGCGGCGAGCTGTTGTGCTGCG
ACTCTTGTCCGTCCGCCTACCATCGCTTCTGTCTGAACCCGCCGCTCGATGAGGTACCGG
ACGGAGACTGGAAGTGCCCTCGATGCAGTTGTCCACCATTGGATGGTAAAGTGGCGAAGA
TTTTAACATGGCGATGGAAGGAACACTCCGCCAAGTCAAAGGCTCCACGTTCCAGAGAGT
TCTTTGTGAAGTGGCATGAACGATCTTACTGGCACTGCAGCTGGATATCTGAATTGCAGT
TGGACGTATTCCACCCCCTGATGTACCGGTACTACATGCGCAAGTCGGACCCCGAGGAGC
CGCCCAAGCTGGAGGAGCCGCTCGACGAGCGCGACAGCCGGTACAAGCGACTCAAGGACA
AACAACACGACTCAGAGGCTAATAACGAGAAGTTGCTCGAGGAGAAGTATTATAGATATG
GTGTCAAACCAGAATGGTTGGTCGTACATCGCGTGATCAATCATCGTACCTCAAGAGACG
GCACGACGTACTTTTTAGTTAAATGGCGCGATCTATCATACGATCAGGCCACTTGGGAAT
CAGAACATGAAGATATTGCTGGATTGAAACAGGCCATTGAATATTATCAAGACATGCGCG
CGTTCATAACATCCGATGGTAAAACTAAAGGCTCGAAAGGTAAGAAACCAGGACGCAAGA
GCAAGAACAAGGATATCACTGACGAGGATGACAGCAGCGCTGGCCTACAAATGCGTCCCA
AGAAATACAACCCACCGCCGGAACGACCCACCAGTAATCTTAATAAAAAATACGAAGATC
AACCACCATTCGTATACGAGACTGGCATGCAACTGCATCCATACCAGTTGGAAGGTCTCA
ACTGGCTCCGGTACTCCTGGGGTCAAGGCATTGACACCATCTTGGCTGACGAGATGGGTC
TCGGTAAAACTATACAAACTGTTACATTCCTGTACTCTCTCTTCAAGGAAGGGCATTGCA
AGGGGCCATTCCTGGTGTCTGTGCCGCTGTCCACAATCATTAACTGGGAGAGAGAATTCG
AACTCTGGGCACCGGATCTGTACTGTATTACTTATGTAGGTGACAAAGACTCAAGGGCTG
TGATCAGAGAGAACGAATTGACATTTGACGACGGTGCTAACAGAGGCGGTAGACCTTCTA
AAATTAAGTCGCAAGTAAAATTCAATGTTTTACTTACTTCCTATGAATTGATCTCAATTG
ATGCAACTTGTTTAGGATCTATTGACTGGGCTGTCCTCGTTGTAGACGAAGCTCACAGAC
TGAAGAGTAATCAGTCGAAGTTCTTTAGGCTTTTAGCTGGTTATCATATTAATTACAAGC
TACTTTTAACTGGTACTCCACTACAGAACAACTTGGAAGAGTTGTTCCATCTCTTGAACT
TCTTGAACAAAGATAAGTTCAATGATCTCGCGGCGTTCCAGAATGAGTTCGCCGATGTCT
CGAAAGAGGAACAAGTGAAGAGGCTTCACGAAATGTTAGGACCGCACATGCTGCGGCGTT
TGAAAGCTGACGTGCTCAAAAACATGCCCACCAAGTCTGAGTTTATTGTGCGTGTGGAGC
TATCTCCCATGCAAAAGAAATATTACAAGTACATCCTTACTAGGAATTATGAAGCTTTGA
ATCCCAAGAGCGGAGGCCAAACTGTCTCGCTACTCAACGTTATGATGGATCTAAAGAAGT
GTTGTAACCACCCTTACTTGTTCCCTGTCGCAGCTGAAGAAGCTCCGTTAGGTCCGCATG
GAAATTACGATACACAGGCTTTAATTAAAGCCTCTGGGAAACTGGTTCTTCTCGCTAAAA
TGTTAAAGCAATTGAAAGAGCAGGGCCATAGAGTACTGATTTTCTCGCAGATGACGAAAA
TGTTGGACATCCTTGAAGATTTCTTGGAAGGCGAAGGATACAAGTATGAGAGAATTGACG
GAGGTATCACGGGAACTATTCGTCAGGAAGCTATAGATAGATTCAATGCTCCCGGTGCTC
AGCAATTTGTTTTCCTCTTATCCACAAGAGCAGGAGGTTTAGGTATCAACTTGGCCACCG
CCGACACTGTCATCATTTATGATTCAGATTGGAATCCTCACAACGACATCCAAGCTTTCT
CCCGAGCCCATCGTATCGGTCAAGCCAATAAAGTTATGATATATCGTTTCGTCACACGTA
ACAGTGTGGAGGAAAGGGTTACTCAAGTCGCCAAACGAAAAATGATGTTGACACATTTAG
TGGTACGACCCGGTATGGGAGGCAAGGGAGCTAACTTCACTAAGCAAGAGTTGGATGATA
TTCTACGGTTCGGCACAGAAGAGTTGTTCAAAGAAGATGAAGGCAAAGAGGAAGCTATTC
ATTATGACGATAAAGCTGTCGGTGAATTGCTTGATCGATCCAAGGAAGGTATAGAACAGA
AGGAATCTTGGGCTAATGAATATCTTAGCTCCTTCAAAGTTGCAAGTTACTCCACCAAGG
AAGGCGACGGAGAAGAAGAAGTTGATACAGAGATTATTAAGCAAGAAGCAGAGAACACTG
ACCCGGCGTACTGGATCAAACTTCTTAGGCATCATTATGAACAACATCAAGAAGATCAAG
CGCGAACGCTCGGTAAAGGAAAGCGAGTTCGTAAACAAGTCAACTACAATGACGGCAGTG
TTGCTCAAACTGAAAACAGAGAGGATTCCACCTGGCAAGAGAATGGATCAGATTACAATT
CAGACTTCTCTCAAGGTAGCGAAGACGATAAAGAGGATGACGACTTCGATGAAAAGAACG
ACAACGGAGATTTGCTCAGCCGCCGAAGCAAGCGACGCCTCGAGAAACGGGAGGAACGCG
ATCGGCCATTACCACCCCTACTGGCCAGAGTTGGAGGAAACATGGAAGTCCTTGGATTCA
ATGCTAGACAAAGAAAGTCATTCCTCAATGCGATCATGCGGTACGGCATGCCACCGCAGG
ACGCTTTCAACTCGCAATGGTTAGTGAGGGACTTACGTGGCAAATCAGAACGCAACTTCA
AGGCTTACGTTTCCTTATTCATGCGGCATCTTTGCGAACCAGGGGCTGATAACGCTGAGA
CATTTGCAGACGGCGTTCCAAGAGAAGGTCTATCTCGTCAGCACGTGCTAACTCGAATCG
GTGTGATGAGTCTAATCAGGAAGAAAGTGCAAGAATTCGAACACATCAACGGGTACTACA
GTATGCCGGAGTTGGTTCGGAAGCCAGTCGAGCCGGTGAAGGTGTCGGGAGCCAGCGAGA
GTGCGGCGCCCAGCCCTGCGCCGTCCACCGCTACTCCTATAACCTCCGCCGCCCCCTCCC
CCGCGCCCACCCTCCTCGCGCACGGCCAGGCCACGCCCGCCGGATCGGACAAAGACGACA
AAGAGGAAACAAAAGACGACAAGGCTGATGTTAAAGATAAACTTAAATCGGAACCAATGG
ACACCACCGAGGGCAAAGAAGATAGCGTTGAAGAAAAAGGTTCACCTAAAGAGGAAGAGA
AAGACCCGGAAAGACGCATGTCGGTGGACGAGGAGCCTCCCAAGGATGATGAGAAGAGTG
AAGAGAAGAAGGACGAGAAGGAGTCTCCTAAAGTTAAAGAGGAAGTAAAGGAAGATCCTG
ATAAGAAAGACGACGTTAAGAGCGAGAAGACTGGGTCTGATGTGTCCGAAAAACCTAAGG
ATGAGAAAAAGGATGACGATGATGACGACGTTGTCTTAGTCAAAGAAGAGGAAGATCTCA
AAGTGGAGCGTCGCAAGTTCATGTTCAACATCGCCGACGGAGGGTTCACTGAGCTCCATA
CTCTATGGCTCAACGAAGAACGAGCAGCCGCGCCCGGCAGAGAGTATGAAATATGGCACA
GAAGGCACGATTACTGGCTTCTAGCGGGCATAGTCACGCACGGTTACGGTCGCTGGCAAG
ATATACAGAATGACCTGCGCTTTGCCATCATTAACGAGCCGTTTAAGATGGACGTCGGCA
AAGGAAACTTCCTTGAGATCAAGAATAAATTCTTGGCTCGTCGTTTTAAGCTACTAGAGC
AAGCGTTAGTGATCGAAGAGCAGCTCCGTCGCGCGGCCTACCTCAACCTCACGCAGGATC
CCAACCACCCCGCCATGTCGCTCAACGCGCGCTTCGCCGAGGTGGAGTGCCTCGCCGAGT
CGCACCAACACCTCAGCAAGGAGTCGCTCGCAGGGAACAAACCCGCCAATGCGGTCTTGC
ATAAGGTGTTGAACCAGCTGGAGGAGCTGCTATCGGACATGAAGTCCGACGTGTCCCGGC
TCCCCGCCACGCTGGCGCGCATCCCGCCCGTCGCACAACGCCTGCAGATGTCGGAGCGGT
CCATCCTCTCGCGACTCGCAGCCACCGCCGGCAACCCCGTGCCCGCAGCTCAAATGGCGC
AGTTCCCGAGCGGGTTCCAGACGGGCGGGTCGCTGCCCGGGTTCGCGGCGTCGGCTGCGA
CGGCCGCCAACTTCTCCAACTTCCGGCCGCAGTACTCCGTGCCCGGACAGCCTACTTCAT
CCTCGAATTCTAATAAATCATAAGCTCCGTAATTTATAATAATATATTCGATTCGACATA
GCCGCAGCGAGCGGACGTGTCCCCGCGTAGGTGAATTAGATGTAAGCTTTTTTGAAGATT
CCTGTTTCCACATCGGCTCCGAAGTGATAATAAATAATTACTTAGTATTAGCTCCGTTAG
ATAACTTGACGTCATTATGAAGAAATTAATCACAATATTATTTATTTCATCTTGATCTGT
ATGAATCTTTTCTATCGTGTAAGTGGATAATTGTGGACTTATGAAATCTTTATTTTTAAT
TTACCAAAAATTGATAACTGAATAAATCTTACAGTTAAGAAACAA
(6345 bp)

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