SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR1905c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_jmjC_domain-containing_histone_demethylation_protein_1_isoform_X3_[Bombyx_mori]
Ontology
GO:0003677 F DNA binding
GO:0004842 F ubiquitin-protein transferase activity
GO:0005634 C nucleus
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0007379 P segment specification
GO:0007526 P larval somatic muscle development
GO:0008270 F zinc ion binding
GO:0016491 F oxidoreductase activity
GO:0016568 P chromatin organization
GO:0019005 C SCF ubiquitin ligase complex
GO:0019233 P sensory perception of pain
GO:0031146 P SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
GO:0031519 C PcG protein complex
GO:0033522 P histone H2A ubiquitination
GO:0034647 F histone H3-tri/di/monomethyl-lysine-4 demethylase activity
GO:0034721 P histone H3-K4 demethylation, trimethyl-H3-K4-specific
GO:0046872 F metal ion binding
GO:0051213 F dioxygenase activity
GO:0051864 F histone H3-methyl-lysine-36 demethylase activity
GO:0055114 P obsolete oxidation-reduction process
GO:0070544 P histone H3-K36 demethylation
Transcript
Level		FPKM:21.63 TPM:21.19
ORF EntryO_TrvaFAMAMG1075_complete:A_TrvaFAMAMG_TR1905c0_g1_i1
Sequence
(Nucleotide)
GGTGGATTGCGTTACTTTTTCTCGTGCTCCGAGTAAAATATTTACGTAAAATAGTGTAAA
TTTGGTTAAGCAGTGTTTCTGACTTACATAAACATGTCGGAAACACTGCCGAATAATAAG
AAACAAGTACCAAGGCAGCTGCGTGAACGCAAGCAGAGAAAACTTTACTCGGACGAGTGG
GCGCTCGGCGATGACGAGGCGGAGGGCGGTCGAGGGTTCTCCCTCGCCGATAAACTGGAG
AGTCCGCGCTTCGAGCACACAGACGCCGTCCTGGAGATGCAGGGACCCGATCTCACCGTC
ACGTACTTACAGAAGAACGGATTCACTACGCCCTTGCTCTTCAAGGAGAAAACCGGCCTT
GGATTGAGAGTACCGACGAGCAACTTCACTGTGAACGATGTGCGCATGTGCGTCGGTTCC
CGTCGTCTCCTCGACGTAATGGACGTCAACACGCAGAAAAACATCGAAATGACTATGAAG
GATTGGCAGCGCTACTATGACGATCCAAACAAGGAGCGTCTCCTGAACGTTATTTCTCTT
GAATTTTCGCACACTCGACTTGAGAACTACGTGCAAGCCCCGCGTATTGTACGCCTGATT
GATTGGGTCGATACCGTATGGCCTCGACACTTGAAGGATCAACAGACGGAGTCTACAAAC
GCACTGGACGACATGATGTACCCAAAGGTACAGAAATACTGCTTGATGTCTGTAAAAGGA
TGTTACACGGATTTTCATATTGATTTTGGTGGTACCTCTGTCTGGTACCATATTTTGCGA
GGTGCGAAAGTGTTCTGGCTGATTCCACCAACTGAAAAAAATCTACAACTGTATGAAAAG
TGGGTGTTATCTGGAAAACAATCTGATGTTTTCTTCGGTGATAAAGTTGAGAAATGCATT
CGTGTTCATCTTCAAGCTGGACATACATTCTTCATTCCCACTGGCTGGATTCACGCTGTC
TACACACCAAGCGACTCTCTTGTATTTGGTGGCAATTTCCTTCATCAGTTTGGCATTGAA
AAACAGTTGAAGATTGCACAAGTAGAAGATGTTACCAAGGTGCCTCAAAAGTTCAGGTAT
CCGTTCTTCACTGAGATGCTGTGGTACGTGCTGGATCGCTACGTGTCTGCGTTGTTGGGT
CGCTCGCATCTCTCGCAGGAGTGCCAGTCCCTGCCGCTTGCAGCACCGGCCGACCATGTA
CATCTTACTCAGAATGAATTACATGGACTTAAAGCAATCGTGATGTATCTCCATCAATTA
GCACCGGCCCGTAAGTCAGTGCCCGAGCTACTGTCTGATCCGATAGCTCTAGTGAAGGAT
GTTCGCACGTTGGTCGAAAAACATCGTCATGACAAACAACAGCTCGCTATTACTGGCACT
CCAGTACTCAAAGGTCCAGAAGAGCCGCCTCTGACCGAGCGTCGCAGCGGCGGCGGTCGC
GGGGGTCGCGGCGGCGGACGAGGTGGAGCTCGACCGCGTCCAGAACACGCTAACTCTACT
CCTCGTAGACGCAGAACCAGGTGCAAGAAATGCGAGGCTTGTCAACGCAGTGATTGTGGA
GAGTGCGTGTTTTGTCATGATATGGTTAAATTCGGCGGCCAAGGACGGGCTAAGCAAACT
TGCATCATGCGTCAATGTCTACAGCCAATGTTGCCAGTGACGGCTTCGTGCGCAGTGTGC
CACCTCGACGGCTGGATGCAGACACCGGTCGCGCCTCAAGCTAAGGGTCGTAACGGTCCG
TCGTCTCTGCGTGAATGCTCCGTGTGCTACAGCATCGTGCACCCGGCGTGTGTACCTCCC
GGTGGACAAGTTAACGAGGACTTGCCGAACTCGTGGGAATGCCCCACTTGCACTACTATG
GGATTCAACCATGATTACAAACCTCGTCACTTCCGTGCTCGCCAGAAGTCGTCTGACATT
CGCCGCATGAGTGTCAGCTCAGATGTCAGCCAAATGAGCCACCATGGAATGCAGAGCAAG
CTGCCTCCACCAGTGGTAGCAGTATCATCCAAATTAGATGGTAGCTCCGACAGTGAAGTC
AAGAATGATGTTCCACACATCAAAACTGAGGAAGATATAAAACGTGAGGAGGAAGAAGCT
TGCAACGGCAGCGAGGGAGGTTCCTACGAGCCGCCCGACAAGAAGCGTCGCTCTTCTGAC
GATGATGAAGCGCCTAAGAAACAGGCGCTGCGAGCTCATCTCGCATTGCAACTCACTCAC
CACACTGCTAAGAAGCCGATGTACCCTGTGCGTCCTGCTAACGGCGCCGGTCCTAGCTCT
GGCGGTGTGTGCGGCGCGCCCTGGCTGGATCGCGAGACAATGCTTTGTGTCTTTTCTAAG
TTGACTCCGCATGAGTTGGCTACTTGCTCCCTTGTTTGCAAGGCCTGGTCGGAGTTTTCG
GTGGATCCATCTCTGTGGCGTAGCATGTCGTTCGTACAAGTGCGCGTGTCCGCCGCTCAG
CTGACCGGCATCGCTCGTCGACAACCGATCTCACTTGGCCTCGAATGGTGCCACCTAGCT
CGACGACAACTTGCATGGTTACTGGCTCGCCTGCCTGCACTACGTTCACTATCGCTGGCC
GGCTCATCAGCAGACGCGGCGCTCGCTTTACGTTCAGCAAGCTGTCCTCCGCTGCGAGCT
CTAGATCTCTCGTTCGCTCGTTGTCTCGACGACGCGAAACTGCGCGGTGTACTGGCTCCT
CCTGAGAACTCTCGTCCTGGAGGCGGAGCGCGCGCCGGGGAGCCAAGCCGGCTTGCTGCA
CTGGCTATACTGCGTCTACCTGGAACTGATATAACTGATGTCGCTATGAGATATGTCGTT
CAGACTCTACCAAAGCTCGTGGAACTGGATGCTTCATCATGCGCTCGTCTGACCGACGCG
GGTGCTGCACAGTTGGCGCATCACTCTCTGCAGCGGCTCTCGCTCGCCGGCTGTCGGCTG
CTTACAGAGGCTGCTCTGGATCATCTCGCTCGCTGCCCCAATCTCGTCAGATTGGATCTA
CGACATGTGCCGCTCGTGTCCACACAGGCCGTGATCAAGTTCGCAGCCAACTCGAAGCAC
AACCTCCACGTTAAGGATGTCAAGTTGGTAGAGTTACGGAAGACCTGATCCGAGGAGGGC
GGGGACGAGTCCGCGCCTGAAACTGATCCGACACCGATGGACGTCGACGATGCCGCATAA
ACGATATGTGATACTAGTGATGTGCTGTGTGTTGCTGTGACAATCCTAACTAACATGATA
TGGCTGGTTCACACGAGGATTTTGAGAAAAAAATATTTAGTTGGATGGTAAATCAGATTT
GTCAAATTGTTAACTTTTTATAAAGTTCCCTAACTATTCTTCTTTCCATTCACTATGTAT
GGAATTCAAATAGTCAATAGCTATTGTTACGAGAAAGTACAAGGAAACATTCTGTACGTG
TTATGCGTCTTTTCTCAATGTTATCTCTTGTAAATCGGCCATAACTTGTTGTAATACAAC
TTTTATTAATGTCTGTGTGTGTGCTTGTTACAGTAAAAGTTTTATCGTTCGAATTTTAAA
ATGTGTGACATATCATAATCATCTGTTTCATCAACACACAGCCGAGGTGTGACAAAGACT
AAAAAAAGTCATTTGGTACTATTTGATAAAGTGATACGATTTCTATATAGAAATATTATT
AGGTAAATGTTTCGGCTGTATTTGTGGATTTCTTTAAGTTTATTTTCAAAGATATAGTGC
CAACGTATTATAGTTTCTAACCTATTTTGTAAAAGCACATTTTCCAATGCACAATTAAAA
AAAATATGTTAACTGTGTATTTAATTTTATTGCATGCTGTTGCATCGATGTTATATTTTA
TTGGAAGTTCAGATGTATGTTGTTTTTCAAATAATGTCTGACTTGTCCTTTTTATTTTTC
GTCAAAATTATTCGATCTGAAGAGGCTACATTTATTAAACGCAGAAAATGTAGACAGTAT
ATTTTGTTGTGATTTCATTCATAATGTGTTATTCTGATTTCTGTATTAGGAGAATGTGTA
AAATACAATAAGGTGAATATTGAGAGCAGGGTAAATTATGAATGAAGTAACGATAACATT
ATTTATGTATATATCTAAACTTCCTGCAATATGTAAATAAACTAAATTTATTTATTTAAA
GTTGACTTATATCCATTATATATTTTATGTTCATGACAATTCCAAATTGCCGAGGTTGTA
CTTCTTTTAGATCTAGTCGCTTTTAGGTTAGTTGCGCTGTGTTTATTCATACGAATAAGT
ATTTCTATTTCGTATTTTGTTAGAAGTTTAGTACTGTGTGTACTGTATTATAAATTTTGT
GTGGAGATCCGTGTGAGTGCCTTCAAACAGAAAGTTTATGAAACTGGCACTCGAATGTGA
TCATTACATACATCGTGTTTAGTGAACTTCCGAGGCACTTTATAATAAGTCCGGTAATTT
TGACGAACGCTATGATATGGAATTAGTTTTCTTATCATCTGTTCCTATGTAGTACGTGTG
TTTGCTACAAAAGTATTTTCAAATGATTATTTTGGATAATCTGTAGTTTAATCGATGTGT
AGTTTTGTGTCTTTGAAATATTTCAAAGTTAATATTAATTGAATTTTAGATGATTGACAA
TTGAAAGTATTTTAATATTGATGTTGAATTGGTAGGATTTAAGTAACCGACACCGTTCGA
TTTTATACGGAGGCCGCCTATAGAATAATAGGACACTCGCTACTTATCAAATCACACTGC
ACAAGTGTTATTTGAGAAGTGATCGCGGATTCTCACCCCAGGCTTCTCAATTGAAATAAT
TTAATAAATTTGGTGTTTTGAATGTTTGTGTCTTTTTAGATAATGTTTTAGAACGTGCAA
AATATTCTTAATTAATCTTAAACACTATGTGTTATAATCAATTTAGAGACTGGGGGCAAT
TTTGAAAGGAATGAGTTTGAGTAACATTTTTACTTAGAACGATAAGCTCTAGTATGTCGA
GCTAGATTCTAAGGATATGTGCCTCTGTGTAGAGAATTAATTGTAGAAATATAAGCTTTC
TTCATGCAATATATTGATAATAACATCATTTTTTACGTACAACATCATGAAGATATTTGC
GATATCAATCAATATGCAAGGAAGATATTTTCTATGTAATTTAGCATTGTTTTATGTAAT
AATGATGTTATTAAACGAATATTTTGTAATATTATAATTTAGTAAATATTTGTAGTTTTT
AAGTAGATGTCGTGCGAGTTTTAATTGAAAATTGTGTTGAGACTCGCATCAAACAAGTTA
CGATGGCGATGAGAGCCAATGGAAGTGAACTAGCTTGTGAACTTGTGTTGAGCCCGATGT
ATCATTGGTTACCATAAGCACCCCCTAGTTATTTACCATTGAATAAAATATTTACAATCG
TAAAAAAAAAAAAAAAAA
(5418 bp)

- SilkBase 1999-2023 -