SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR18799c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_uncharacterized_protein_LOC101742029_isoform_X2_[Bombyx_mori]
Ontology
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005829 C cytosol
GO:0007249 P I-kappaB kinase/NF-kappaB signaling
GO:0008270 F zinc ion binding
GO:0009898 C cytoplasmic side of plasma membrane
GO:0010803 P regulation of tumor necrosis factor-mediated signaling pathway
GO:0016874 F ligase activity
GO:0023035 P CD40 signaling pathway
GO:0031625 F ubiquitin protein ligase binding
GO:0035631 C CD40 receptor complex
GO:0043123 P positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0043130 F ubiquitin binding
GO:0046872 F metal ion binding
GO:0050852 P T cell receptor signaling pathway
GO:0051092 P positive regulation of NF-kappaB transcription factor activity
GO:0071797 C LUBAC complex
GO:0097039 P protein linear polyubiquitination
GO:1903955 P positive regulation of protein targeting to mitochondrion
Transcript
Level		FPKM:1.75 TPM:1.71
ORF EntryO_TrvaFAMAMG22702_5prime_partial:A_TrvaFAMAMG_TR18799c0_g1_i1
Sequence
(Nucleotide)
GCGGAAAGCCGCACCATGTCTCGGACCGTGTCTCGTGCCGGGTCTCGGGCTCCGTCTCCG
GCCACCAGTGTGCGGTCGCGCACCTCTCGTCGCACCAAACATCGGACACCTTCACCTTCT
CTGCCCTCCAGTGATGCCGACACTGAGAGCGAAGGTGAAAGCTTCACAGCGCCACCAAAA
CCCAATGAGGCCCAAGAAGAAAACGATAATTCTCTAGGACCTGCACCGCCGCCCCCTGAT
ATTAATTGGCAATGCGAACACTGCACCTTCGTTAACGAGCCTGGAGTCAGAGTGTGCATC
GTCTGTTGTCGCACTCCTACTGTTGCTCCGAAAATTGTAGACGTTAGACAAGATATGAAT
AAACTCAAAATTGAAACAAAAAACTCCACACCAAATATCGAAAGGACAATCGTTGCAGAT
TCTCGAAATAAGCAAAACGGAATAAGATCTAGTCCAAAAATAATTAAGGAACGAAAATCC
ACTGGTTGTGGACCATCACCACCTCGAGAACAAACTACTGCTGTACAAAAAATAAATAAT
CAATCATCATCTGTTGAGAGTAACAAATATAATAGCATCGAAAAAAGTACGAAAGGACAT
GACATTGCTGTTGGTCCCTCTCCACCACGAGATATACAACAGACACAACAAACAAGAAAT
AATATCACATCGTCCCCACAGGTCGAAAGAAAAATCCGTGAATCATCCTATAGAAATGTA
GACGGTTCTCCTGTAAGAGACGAGCCAAAATCACATAGTATTTCAATTGGTCCCTCGCCG
CCACGTGAGAACATTCGTGTGTCGAATGAATCCGAAAATCTAATTCAAAAAAAGTCCACT
GGGACGTCGCCATTGCGCGACGTCGTCGTTAAAACCAGCAATGTCAGGCAAAATACTAAA
ACCAGCGTCTCGAACACAGGCACATCACCACCACCACAAAGTATCTCGACTCAGACTTAT
GAAGTTCCGAAACAATGGGAACGTGCACCCTCGGCTTCTCGATCAAGACCAAGACGTCGA
TTCCGAGACGACAACCGACGTGAACGATCTCATAGCAGACATTCATTGTCAAGTGATACT
CGAGAAAGCGAACGCAGCGTCAAAACATTAGGCACAAACAGCCGATGGGAGTGGCGTGAA
GAGGACAGCAGTCCGGGAGCCGAGTGGGAGAATGGACACATGTCACGTAGGGCTTCAGCT
TTGGATCTACGGAGACCAAGATCACATCGTCGATCTGGATTTTATGGATCAGAGGCTGCT
TCGCCAGAGCCGACAGGAGCCACTCGAGCCACGTCTCTAGAGGCATTATCTGGGGCAGGA
AGACGTGAAACTGAACGTGGTCTCGAATTGGCAAAACTAATGACGGAAGCTGAACGCTTA
GGCTTCAGCGCAGCAGAAGTTCAGGCTGCATTAGTCCAAAGTCCAGCAGCACCACTGGCC
TGGCTGCGGTCGCGGTGGCCGAGCCTGTGCGCCGGCGTGCGGGCGGCGGCGGCTAGACTT
GCTCCGGAGGCCGCCATCTCCGAACTGGAAGCTCGAGCGTCACTCGCGAGGCACCGGGGC
GCTATGTGGCCTGCAGTCACGGAGTGCGTTGAGCGACATCGCAGACAGACAGGGTCAAGT
GAAATGGCAGAAGTAGGGCGCTTACGAGGACGCGTGTGGGGCTCGCCAGCCGGCGCAGAC
GACGACGCCGCTCCGCCCCGGTTCGCATCGCGCCGCTCATCACGCGCGCGCGGTAATCTC
GAACGCCCTCTGAATCCTTGAACTACCATTACGTATAAACATCGTGACGTCATCGTACAT
CGTCATAACCGTCACGTTTACGTTTCAGCAGAAGATAGTTCAGATGAATTGGAAGAACCT
ACGCGGCCGGTGTTTCGAGACGACGATTGGATGTTTCTCCCGTTGGATGTGAACTTGAAG
GACGAACAGGAAACCTACCAAAATCCTCGTTCATGGAATAAACATTCGTACGATGCCCCA
CATGACGATAAAGAAGACGTAAATATTATATTAAATATTCTTAAAGATAAGAACTTAGAA
GAAAACTTCTTACGTAGTTTAATAGAAAATACACAATCAAAGTTGGAAGAGAACAACCCA
ATTGATGCGAGTAAATCAAATTTATTTGATTTGATTCAGTCTGAAAATGATTTTATAGAT
GCCTATAACGCTTTGACGAAAACTAGTCCATTACCTAATATTAATAATGTTATTGTAGAA
CAAAACAAAAAATATTTTCCAGCAGAAATTGATAGAACTAATATTGGTAAAATAAAAGAT
CCATACAACAATAGAAATGATCGTTTTCAAGGTGCAGAAAAGACGGCAGTTATTAAAAAT
AATAAAGAAGTACCTGTAGATAAAGTAACTAATAAACTTAAACTCCTTAATGTTGAAGTT
CAAGATACTAAGATGCAAACGACAAAAGAAACAAAAAATTCAAAAACTAGAACTTCTAGC
AGGAATTCCCAAAAACAGAGTGAAAATAATCAACAAACTGAGATCCACAATAGTAAACAA
AATCATCACTTAAAAGAACAAAATGGAGTTGACAGCAAAGTACATAATTCGTATGAAGAT
AAATCACAAAATTTAAATGAAATAGTAGACAGTACTCAAAAACTAATACAACAAATGAGA
GAGGAAATTGACTCCGACATGCATTCATTCGAAAATGATAACATCTCTCGTAGTGAACAC
GAAAGTTCATCGAACGATGAACAATCATCAAGTTATAGTGATAGTGACCACGAAACTGAA
GATTCTGAAAACATTACTTCAGACGAAGACGAAAGCTCTAGTATTGAAGAAAATTTGAAA
AATGAAACTAATTTAGTACGACAAACTGAATCCTCGCACAGGACTAGCTCCGAAGATAAT
GAACAATTTGAAGAAGCAATGGATCACATAGAGAACCAAGTTGAAGATTTCAAAAATGAA
AACATGGCTATTCTAGATTCAATTGCTAAAAGTTTACAAGAAGAACATAGTATTAATATA
GAAGAATCTATACCTGAAAGTACTACCAGAAAAGAAGATCCAAATAACAATTTATTCGTA
TCAGTGAATTCGTTTGATGAAATATATGCTCAGTTAAACACTTCTAATGTTCAGCAAAAA
CAGATTCTTGAAAATAAAAACATTTTACAAACTAATACGTTACCTGATATAACCGTGATA
GAAAAGCAAGCAATAACATTACGTGAATTTCGACCTCCGGCATCATTCCAACTAATAATA
GCGGAAAATATACAACCTAAATTAAAAGGAAAAATAAACATCATTGAAACAAATTCTGAA
ATCTCAACAGAAATATTGAGTAATACAGATGAACAAACTGAGTCTACTGCTCTTGACCAA
CTGAATACAAAGCAGACTATTCCGGAAACCGAGCTTAATCAAGAAGACATAACAGAAATT
CAGGGTAATCACCAGTCTATGGAACTTCACGAAGGAACCATTTCGGATGGTGCTAGTGAA
ATGCAAAATGAAATCAATGTAACAGAATTTGGAAATATAAACGTTCTGAAGGAACAAAAA
ATTGATAACGTACATTTAAACATACAGATACATGAAGTTACACAACCGTTGACAGTAAAT
CAACCTAACTATGTAATGAGTAGTCAAGAAATACAAAATGTACATAACGATTTACCAGAA
CCAAATTTAGTTAATTTACTTAGCCAGGAAAAATTCAATGAACATGAAACACAATCCGAT
TCTTTAAATATCGTTAAGAAAAAACAGTTGCCACAGATACATGTCCCACCACATGCTGAA
AATAATAGAACTACAACCAACGAAAGAATTTCTAAAAATCTTATTTCGAAATCAAACATA
CCAAAATTAATAAGAAATACTTTTAGCGGTAAAACGAAATCAGACAAAAACGCACCAAAA
TTAGTTGTATCGAAAGTGCCCATTCGAAGATCTTCAACCAAACAGTATCCTGCACCAGCA
CCACCTAAATCACAATTTGGACATATTCAGAATGGACATGTAAAACAATTGCAAACAAGG
CTTTTTGATTCAAAAGCTAAGCTACAAACAAGTGTCGAGAAATCTTCAGATTCTATATCC
GAACCTAAACCTTCGACATCAACTTTGACCAAAAAGAAGCCAGCTCCACCGCCACCTGCA
CAAAAACAAAATGAAGAACAAGCAACAACATCACAAATATTACCAATCGTGGAGAAGAAA
AAGAATTACTTCCGAGAGACATGTCGAACTGAAGATGAATGGACAGAAAGTGATTCTGAC
AGTTCTCAACCCGCAATGAGGAAACCGATTGAAGAAACTAATCACAGACCGCCTTCACCT
CCTCCACCACTCACACTTCGACGTGTCTCAGGGCAGCTGATTGATTTGGCCAAAATAAGT
TTACCCGATGGCTCACCAGAGAGACAAGCTCGTATGTTATTAGCAGAAGGCGCTACTGAA
ACTTGGGAACAAGCGCAAATCGCAGTAGAATTAATATCTCGGGGAATCGAATCGTCAGCT
GCACTTTTAGCAGCTCTGGAGTGCACAGATATTACAAGCGCACTTGCATACTTACATCAA
GATTGCGAACTATGTGCTTCACGACTGCCTGAACATGAAATGGTATCGATGTTACGATGT
ACTCATCGATGTTGCCGAGAATGCGCTCATCATTACTTCACCGTTCAAATCACGGAGAGG
AGTATAGCAGACTGCGTCTGTCCGTACTGTAAAGTACCAGATCTAGAAAATCTTCCTGAA
GACGCCTGGTTAGATTACTTTGCACATTTGGATATACTGCTAAAGACTTTACTTGAAACT
GAAGTTCACGAGCTATTTCAGAGAAAGTTGCGTGATCGTACCCTGGCTCGGGATCCCAAC
TTCAGATGGTGCATGGAATGTGCTTCCGGATTCTTCGTACATCCTAAACATAAGAAATTA
CGTTGCCCGGAATGCCGTTCAGTCAGTTGTGCATCCTGCAGGAAACCTTGGACAGCCAAT
CATGAAGGTATTACATGCGAACAATATGCTACATGGT
(5017 bp)

- SilkBase 1999-2023 -