SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR18743c0_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_aryl_hydrocarbon_receptor_[Papilio_polytes]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0003677 F DNA binding
GO:0003700 F DNA-binding transcription factor activity
GO:0003705 F DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0004879 F nuclear receptor activity
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005667 C transcription regulator complex
GO:0005737 C cytoplasm
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006366 P transcription by RNA polymerase II
GO:0006805 P xenobiotic metabolic process
GO:0006950 P response to stress
GO:0007049 P cell cycle
GO:0008134 F transcription factor binding
GO:0009410 P response to xenobiotic stimulus
GO:0009636 P response to toxic substance
GO:0010468 P regulation of gene expression
GO:0030522 P intracellular receptor signaling pathway
GO:0030850 P prostate gland development
GO:0030888 P regulation of B cell proliferation
GO:0032922 P circadian regulation of gene expression
GO:0035326 F cis-regulatory region sequence-specific DNA binding
GO:0043565 F sequence-specific DNA binding
GO:0044212 F transcription cis-regulatory region binding
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0045899 P positive regulation of RNA polymerase II transcription preinitiation complex assembly
GO:0046983 F protein dimerization activity
GO:0048511 P rhythmic process
GO:0048608 P reproductive structure development
GO:0048732 P gland development
GO:0051879 F Hsp90 protein binding
GO:0070888 F E-box binding
Transcript
Level		FPKM:10.02 TPM:9.82
ORF EntryO_TrvaFAMAMG22530_complete:A_TrvaFAMAMG_TR18743c0_g1_i2
Sequence
(Nucleotide)
GGAAGCGCCACGCGTTCCATCAAAAAAAAAAAAAAAACACGTGAAAATTCCAAAAAACAT
GTGCAAAAGAACTCATTCGTTTAATCGAAGATGAAAATCGATTTTTTTTTAATTCGGAAC
ATTTTAATCGATAAAGTGACATCTGGCGTTTAAAACTGAAAACTGTGTTACATAAACAAA
GTGAAGTGCTTAATTATTATCTTCCAGTAACATTCCCGAGTTTTTGGTCAAAATCTTAAG
CTCAAATTATCTTCCTATAAGTGTTTAATCAGTGCAATAACAAACAAAGAAATATATTTA
TTTTTAAAAATCATTTGATAAGGTAGAGTAAGGTTTAATTAATGCTGTCCAATTTAGTTC
TAAATAAATTACCAATAATATAAATAAACCAGTGTTATAAAATCGTAGAGATAAATTACT
TGACTCTATAATTATTAACAGAGCTAATTACAGTATTGCTCTACATATAAATAGACATAA
TAACATACTGAATAAATACAGTATAAAATTTAAATAATTTCAAGAAAATTAATGCATCAT
TTAACACTTTCAAATTCTGGAAGTAATAAAAGTGTCTGAACAAATCAGTGCATAAACCTA
AAAGTGTAGACAAAACAGTGCATAAAAAATTGTGTAGACAAAACATTCCACACCAAAAAG
TGTACAGACAACAAAAACTTGATGACAGATTAACAGTGAGATGTATTAGCGAAGGCGTCG
CTCGCAAGGGTTTCGCGTTGTTGGGACGAAGCCGTCAAGATAGCTGCAGAGCCGAAGCTG
CAGCTGTGCGGCTGGGGCGGGCAGGGGTACGCGCTCGAGGGATGCGTGGAACCCGGTCTG
CTCCGGCCGCCGCCGCAGCCGCACTCCAGCCAGCTCGGGACGGTCTACGCTACCAAGAGG
AGAAGGAGAAATGGGAAAAGCATCAAGCCCCCTTCAAAAGACGGCGTCACGAAGAGCAAC
CCCAGTAAACGACATCGAGAACGCCTTAACGCTGAGTTGGACACCCTGGCTTCCTTGCTA
CCTTTCGAGCAGAATATCCTGAGTAAACTGGACCGGTTGTCCATTCTGAGGCTTTCTGTC
AGCTACTTGAGAACGAAGAGTTATTTTCAAGTTGTTATGCACAAAGAAAAAGAGGACATC
CACGGTCACCGGAGAGAGCACTCTCCTTACGATCACATCATGCCAGATGGAGAAATGTTT
TTACAGGCCCTCAATGGTTTTCTTATGATCTTAACTTGCGAAGGAGAGGTTTTCTTCGCA
ACTCACTCCATCGAGAGCTACCTCGGCTTCCACCAGTCAGATATAGTCCACCAGTCAGTC
TACGAGCTGGTGCATTCAGAAGACCGTGAGGAACTTCAGCGACAGATCCTATGGAACTCC
TTCCTGCCTCCTGAAGTGAGCAACCTAACCTTACAAGATGTTCTTCGACCGGAGAGAGCT
CATCTCTTGGAGAGGAGTTTCACAGTCAGATTTCGATGTCTACTGGATAATACTTCGGGG
TTTCTGAGGCTAGATATTCGGGGGAGAATAAAAATACTGCACGGACAGAACAAGAAAACT
GAAGAACCGCCTTTAGCGTTGTTCGCGATCTGCGCACCATTCGGACCTCCAAGTCTGCTG
GAAATACCTCAGAAGGAAGTCATGTTTAAAAGCAAGCACAAGCTTGATTTATCTCTAGTC
TCAATGGATCAAAGAGGGAAAATGCTGTTAGGCTACACAGACGCAGAATTGGCCAACATG
GGTGGCTACGACTTGGTGCATTATGATGATCTAGCTTACGTTGCAAGTGCTCATCAAGAA
TTGTTAAAAACTGGTGCTTCCGGAATGATCGCGTACCGCTTCCAGACGAAAGAGGGTCAG
TGGCAATGGTTGCAGACTTCCTCCAGACTCGTCTACAAGAACTCCAAGCCAGACTTCGTT
ATCAGCACGCATCGACCGCTCATGGAAGAAGAAGGCCGAGACCTGCTCGGGAAGCGAACT
ATGGACTTTAAAGTCAGCTACCTCGACACCGGCCTGACCAGCCTCTATTTCTCCGAAACC
GAACAGCTCTCAGGCTGCGAGACCACCGTCACCACGCCTCCCAGAACCACCAGACGATAC
AAAACCCAGCTCAGAGACTTCTTGTCCACCTGCCGGAACAAACGAAGAGTTCCTACCACA
CCAGCGCCGCCCCCAGTGGAGTATCTCGCTGCTGATGCTGTAGCAGCTTACACTAACCTG
AATGGGTACACTGCTCCTTACGGGGAGTACCCGCCTGCTCCTATCCACTACGCTCCCCCT
CCTTTAGACGACCGCTTCCTGACCACAGACAATATCTTCCACCAATACAAGCCTCTCTCT
TACCACTACACACCGTACGCTCCTAATGGGTTCCTAGAGCCTGCTCCTCCAGGGTACGAG
GTGTATCCTCGGCCTCCTTCTAGGGAGTACTACGTGGACAGTTCTGGTCGGTACATGAGT
CCTGTGGGGCAGGAGAGGAGGTCTCCGGTCGGGCCGAGTCCAGGGTCGAGTGGGTCTGAG
GGTCTGGTGACGGAGGCGCCGCGGCAAACGGTGCTGATGTGGGGGGCTGGTGCCGGGGCT
GGACAGGAGACGCCGGTGGAGTACTCCCCTCCTCAGGTGTGGCGCTATCCTTCGTATCAC
ACGGCTGAGGCGACGCAATGATTGTGCAATTTTTAGTCAATTTTCGAGCTTTTTTTTGGT
CTGTAGATGGCGCTGATGGTGGTTTAAAAATGCAAGAGATTTGAGTAGACATTCGATCAT
CAATGTGCATAAGCAAAGTGACAAGGTTGTGTATGTCTTGTCATACAATGGTCAATAAAG
GTGTTTTTTCATTTAGTTCTAATTTCAAGATTGGTGCTGCAAACTTTTATAACACCAATT
AAAAGTAAATTAAAATAAATCAAAAACAATAATATTACTGTTTAACACCCAAAGCGCCAT
CCACAGACTCTTCATTTGTAAATTAAAACCACAAAAACCGCTCAAAATGTTTTCCACAAA
CTTTGTTACCATTTCTAGCGCTATTTACCTCGCTCAGTGGTTTTAGCTCCTGGTCTATAT
CTGGGTCTCTTGATCTATATCTGGGCCTCCTGGCCTTTTCTGGGCCTCTTAGACTAAAAC
AGGGTCTTTCCAATATCATAGGCAATTTTTAAATTGTATTATAGTTGTAATTCAAGAAAT
TATATCCAAATATTTAAATTAGTACGATGTTTTTAGGAGTAGTCTACACGCGCTAATGTT
GATGTTATTTCATAATTATGCGAAACATTACAAAAATAAAAATGATTTATTGCGTTCATT
TTTGTAAACACGTTTAAAAAATCCTACATCTAAAAATGAATAAATATTCATCTGGGGAAA
AGATTCTATAAAACTAATAAAACGACAAGGCCTCATTTGGAACCTCATAGATAAAGTATG
TAATATTATGTACACATGTGTACATTTTCTAGTTGAGAATACTCAAATCCGCCTATTTAG
AAAAAAAAAGAAAAGTAAAAAGAAAAAATTTAAATTATCGAAGAAGTAGAAAATACTTAA
AATAGTTAATCAGATAATTTAAAACTGACATTTTTATGAAATATCATCAACAAACTAACA
CGTTAGTAACATAAAAAAATTGTAAATAATAGTTTGAGCTTGAACAAAAGATGTGTGCGC
ATTTTATACTTATAAGTAATCTTTAAATAAAAATAATAAAGACACATTATTTACAAAATA
AATGACAATTTGAACATATCACATTTTATTGAAAATAATAATAATTATGAGCACTGATTT
GGATAAATTTTGTTCTTTCACGGTGTGTGTAACTATCCTTATAATATTAAGCTGTTGGAA
TTTTTTTGGTATTTTTTCGATGAGACAGGTGAGTTTGTGAACTTGTTCAAATAATTCCGA
TTTCGCATTTTATTTGCTACTTTATGAATAAAAAAAATACTGATATGTGTATGAATTTAT
TTTATCTCTCTACATAATTAAATTGTATATTCAACAACTTATTTACTTATATGTATCACG
AATTTATGAAGTCTAATCGATAATTTCAAATATTATTTTTCGTTAACATACAAGATGTTT
TATGAATTTTTGAGAAAAATAGTTCAAAAACGGATCACAGATTTTATAAGGATATTTGCA
TCCACCTCACTGCCATGCCAACGCCGAACACAGCACTGAATGTAAATACACTAATTGTGC
CTTTTTCGCATAATCACAAAAAAAACATTTACCAAAATAAAAAAGTAATTTATATTTTTT
TTGTGCCGCAGTGATGGCGTTGGCATGGCAACGTGGACGAATGTACTTCCGACTACATAG
CGTTAAGTATTAATTAGAATTTTAAAACTAATTTAAAATTGAAAACGTTTGTATTTCTCA
TTTACGAATAACATGATTTTACCGGGAAAAAAATTACATCAGAAAAAACTGTTATTCAAA
TTTTTCTAATTGTAATAACAGAGTAATAAAAATAAGGTACTTATTTTTTCACCATCAATA
ACTGCTATTTTCATTTTAAGCTATTTAAGCTGTCGTAATATTTAAATTGATTAAATAAAC
AAACTAAAAATCGTGTTATTCGTAAATAAATTAATCACTTTGTCTTCTTAACGCATCTTA
TTGTAAGAAATCTTCCAGTCAACAGTTTTTGATTGCACACTCCATTAAATAATTAAATTC
ACCATGTCTATAATGTACTTCTGTTTCAATAAATAAATAATTTATGTGTAATTTATAAAT
ATTATTAAATGCATAGTTTAAAATAATTTGTTATAATCTAAGAAAAAGTCAATTAAACAA
GTTATTTGGAACAAAGAACGTGATTTCTAAAAATAATTATATTAAATTACCCAAAAAGAT
GAAGGAAAACATCGTGAGGAAACCTGCATGTCGGAAAAAGGTTCTAAAAATCCTTTGAA
(4919 bp)

- SilkBase 1999-2023 -