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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR18616c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_LRSAM1-like_[Bombyx_mori]
Ontology
GO:0000209 P protein polyubiquitination
GO:0004842 F ubiquitin-protein transferase activity
GO:0005737 C cytoplasm
GO:0006810 P transport
GO:0006914 P autophagy
GO:0008270 F zinc ion binding
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030163 P protein catabolic process
GO:0045806 P negative regulation of endocytosis
GO:0046755 P viral budding
GO:0046872 F metal ion binding
GO:0051865 P protein autoubiquitination
GO:0061630 F ubiquitin protein ligase activity
GO:0070086 P ubiquitin-dependent endocytosis
GO:1904417 P positive regulation of xenophagy
GO:2000786 P positive regulation of autophagosome assembly
Transcript
Level		FPKM:4.72 TPM:4.62
ORF EntryO_TrvaFAMAMG22224_complete:A_TrvaFAMAMG_TR18616c0_g1_i1
Sequence
(Nucleotide)
AAACGGTCAAAGTTCAATCGCAAAAAACTCAAAACAACAAATGGATTTCCAGTTATTCCT
TTTCGTAATACGAACAAAATTAATCTCGTTTATTTTGATAGATTTGATAAGCTAATCAGA
TACTAAATGTGTATGTTGAAAGTGAAGAAATTTGCTATTATGTGTCCTAACTTAAGGTGA
CGGTTCGGTTACCGTCGGTTTTTTATTTTGAATATTTTTATTTTTTTTCTGTTAATGGGT
TGTGCTGCATCTTGCATCCAGGAAGCGACCATGTCGCTGTTCGGGAGGAATTCAAATAAT
AACAACGAAGACGACAAAACGAAATTGGAGAGAAAATTATATGTCGCCAAGGAGTCGCCT
GAGCCAGAATTTGATCTCTCTGATTGTAATTTGCGTCAAGTACCGTCCGGGACATTCTCT
ATTTGTAAGGTGTACAGAAAAGAATATTTGTATTTACAAAACAATGATATACATTCCTTG
GATGAAGGTGGGCAAATATCTGATTTGTATCTTATTAAAGTGCTCAATATTAGTAGTAAT
AAATTTTCTCAGCTCCCTGGTGGTATGAAATATTTGATTAACGTCACAGAACTATATGTC
CAAAACAATTTGTTGAAAAATATAACAGAGAACATTCAATTTATGGAAAATTTGCAAATA
TTTGATGTATCTAACAATAAGCTGAAACACCTTACACCTGTTCTTGGTAAATTAAAATGC
TTGAGAAAGCTCAATGTAAGTGGCAATAGAGACCTAACAGAAATTTGTCCTGAGTTATGC
TTTGCCACAAATTTGGTCTGTTTACAATTAGATGTGGATCATATTACTTTTCCTCCAGAA
GAAATCTGTTTACAAGGCACAAAAGAAATAATGAAATTTTTATGTACAAAAATGAATGTG
GAGTATTCACCAGCATCAGAAGATACTGAAGTATTTTCAACTCGAACATCAAACTCATTA
ATAGATCCCTTTGCTAAACAACATAGTATAACTTGGGAGCAGCAAGAAGCTTCTATAATA
GCACAAGAGAACAGAATACATAAAATTGCTAAAGAACAAAGAGAAAAGTTCTTGTCAAAA
GTTGTACAGGAACAACTAGAGTTGGACTCTGAAATAGCCAAAGTCCATGAACTGAGAGAG
GTAGAAAGACAAAGACTGATTAAATCTATTCAAGATGATGAAAAAGAAATAGAATGTTTA
GTTAGAAACTTTATACAATCTGATAATTTGAAGCCAGAAATTGTTCAGCAGCAACTAGCT
CATGAGCAGGCGGAACATGATAGACTTCTAGAAATAACAAGACAAAATTATGATAATGTT
AAGAAAACTGATATCTTGAAAGCCATGGAAACACTCTTAGAAGAGGATAGTGCCATTAAA
TATTCTAAGAAACATTATGAGGATTCTTTGAATAACATTAAACAGAGCATGTTGATGCAA
GATGCAGAGATAGCTGATAAAGTGAAAGGTCTCATCAAAGCTAAAGATCAATCTAGAACA
GTGTTAGTACAACAGTTTCTTGAAGATCAAGATATTCAGAAAGCACTTGTTGCTTCATTA
CTAGAGAGAGTTGATGCTAGAAGTTGGAGTTTGAATCAAGAAATAGCTTTGATATCTTCT
CATCTTGCCAGACTCAGTGTTATAGAACAAGAGAAGAAAAAAATTACACATTTCATACAA
CTACAATGAACTACTTGATCAAAGACTGCATCTTGTAAACTTACTGGATGACCTTTTCAA
ACAACAGAATAAAAGGCGAAATCAATTAATTGAAACAATAAAAGATATGGAAAACGAAAA
GAGTAAAACAACTGATTTTTGGTTGAAAAATTACCAAAAATTAGTAGAATCTGCCCCAAA
AACATTGTTAGACGTTGGCAAGTCATTGGATCCTATATTTGCTAATTATTTACTACAAGA
AGGTGTTATACACTGTTTGCCATTTTTAGTTAAGTTCCTGTTTTCTGGCGATGTGATAAG
TAATATAACTTTGGAGAAGTTAAAAGACAGTGGAGTTTCACTTTCAGCTGACAGAGAAGC
TATATTAAGAGCCATATATTATTATATTGGGAATAATGCTAATGCTAATAATGATGAATG
TTCATGTGTAGAGCCTAGTGCCCCAATAGAGAATACTGATGAGAACAATTGCACTGGTGT
TGTAAATACAACAGACGAATCTACGTCAGAATCTGAGTGTGTGATATGCATGGATGCAAA
ATGCGAGGTTGTGTTTGTACCGTGTGGTCACATGTGTTGCTGTAAGAACTGTGGGGCTGG
CCTTGAAGAATGTCCCATGTGCAGAGGCAGCATTGAAAGAACAATTAAAGTTATGATGGC
TTGAGATTTAAGTCAGGTGCTCAAAAACAACTTTGTGAGGTGAAAATAGAAATTAATTCA
AAGAAGACATAGATAAGTTGTTTAGAGTTGTATGTTATTTTCTTCATTACCTAAATGTTT
AAAATCACCTGTTTTTCTATTGATAAAATTAAGAGGCTGTTTAAAGATGTTTGTTATACA
AAAATGTATTCTATTTTATAAACCTTAAGACAATTGGAAAAGATGATTAAATTATAATTT
ATATTGTG
(2588 bp)

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