SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR18454c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_sorting_nexin-16_[Papilio_polytes]
Ontology
GO:0005737 C cytoplasm
GO:0005764 C lysosome
GO:0005768 C endosome
GO:0005769 C early endosome
GO:0005770 C late endosome
GO:0005829 C cytosol
GO:0006622 P protein targeting to lysosome
GO:0006810 P transport
GO:0008289 F lipid binding
GO:0008333 P endosome to lysosome transport
GO:0015031 P protein transport
GO:0016020 C membrane
GO:0031313 C extrinsic component of endosome membrane
GO:0031901 C early endosome membrane
GO:0031902 C late endosome membrane
GO:0035091 F phosphatidylinositol binding
GO:0042802 F identical protein binding
GO:0045022 P early endosome to late endosome transport
Transcript
Level		FPKM:7.10 TPM:6.96
ORF EntryO_TrvaFAMAMG22149_complete:A_TrvaFAMAMG_TR18454c0_g1_i1
Sequence
(Nucleotide)
GTTTTGTCCTCCGCTGAAGACGTGACGTGATTTAGTTTTGTGTTTATACATTTATTATTA
GCAAAAAAGTGCGTTTCAAGTCCATATTGTAAGCATTTACCTTTTATTTCAAAGACATAC
GAGCTTACATTAAGTCACCGAAACATACAATGAAGACGATTGTTGTGAATAGTGAACAAT
AAGAAACGATAAGTTCATTGTGTTCAAATAGGTCCAAATTTAATATCCTAATTCGAATCT
TGTGGGTGTGTTTAACGTTCAAAGGATATGCACCATTGACATCGCAAAATGACCACAAAC
ATGGATATAGTACAAAACATAAACCTGCAGAACAGAGACTCGATGAACAACGAAGTATCT
TCAACCTCCAGCGACGACAACACGACCTTCGGCAGAATCAGACATTATTACAAAAATAGG
TACGACTCCGCCTCGGACAACGAACGACCCGTTAGACCTCCAAGGGCCCGCCAGTTCTGC
AAAAGCATGCAAAACCTACACGAAAACTATAGGAACGACCACAATCGCAACATATCTTCA
GTGACCAACAGCATCAGTAATATCGACTTGAGTCTACACAGAGCGGAGATCAAGAAATTC
GATAAACTGCAGATCCCAATAGTAGGTTATGAGGTGATGGAGGAGCGCGCGAGGTTCACC
ATTTACAAGTTGAAGGTCGAGGACGATAAACGCGACCAATCCTGGCTGGTTTTCAGAAGG
TACACGGATTTCGTTAGACTATATTCTAGGTTGAAATCTGAGGAACCGAACATTGATTTA
CCTCTGCCAGGTAAAAGGTGGTTTCGAGATAATTTCGAGCCCTCTTTTCTCGAAGAAAGA
GTGCGGGGGTTACAGACTTTTGTGAATGTCATTCTGTATAAATTGCCCAACCATCCTATA
GTTCGGGAATTTTTCTGCCTTGACGAACCTCCCCAAGACTTTAGCTATCAGCCTGAGGTT
CAAGCTGTTTATGGGGCGTTAGAGGACTCAATAACCACCTTAAGAATGCAATTGAAGCAA
AAAGACGCTACGATAATGCATTTACAGAAGCGTGTCGCTCTTTTAGAGGGCACAGTCGAA
CAGTGCTCGAGTTGTAGTGGAAAAATTAATAATGTTAGTATGTAGCAGGGACTAAAGCTA
ATTTGTGAAAAATGTAAATTGAAGCAGCTCTTTTCTGTGGAATTAAGAGTCTTCCAGTAT
ATTTCTAAGAATATACAGTTAATAGACAATATTCTAACGAAGAGTTTATATCTCTATTGT
TTTTGAACACTTGTTTATGATTAGTGCAGTCTTTAATATAAGGTCCACCTAGGCCTAAAA
GTTAATTGTTGTATTTCAAAGTTTGCGAATTGATTGGCTGGTCCACAACACTGTCTTTTT
GGGCAAACTCTGTTATAGTAGTATTTTGAAATATTTAATACTTTTTCTAAATTCGGTAAT
ACCCCAGAACGGATTCTCAGCTTCTTAGGTGATAGAGCAGCTGTAGTTTCGGTAATGCAT
AAGGATCCGGCTATAGCGTAAACAAGCTCACATTGGCTGCTATTAATTGGATAATAATAT
AATAGCGAATTGGCTGCTTCATAGTGATATTAATTTCGATTTGAACATTCCAAAATTCAT
CCCAAAGTGCCCCAAATAAGAAATTCCATTGGGAAGTTTTTGCAAGTTTCCAATAAAAAA
TTATCGAATTCGGAGTCGATCTTTTACGACTCAAAAGTTAATTGGTTGACGTTAGAAAAA
AGTAGTTTGTGCATTATAATGTATTTATGTTAACACGAGAAGATATTGATATTTTATAAT
TATCATTCGATTAAGTTTTTACCAAAACGTAGGTGCTAAGTACGTCACATTTCAACGCAT
TTACAATTAAATATTTTTTAGTTCAATTTCATGTACAAATGTTTAGTTAAGTGTTTTTTT
TTTATTATGCTATTTCTAAGACAGAAAGTAGTGCTATCGTATAAGGCAACAGAGATCGGG
ATTGGTATTTTGATTAAAACTTGGTTCACCGTCGTCTCAAGTCCAATGTCAGAAATACAA
GTCAAAAAAAAAAATCAAAATCAAAATTCAATTATTCTGAACATAAATAAATTTAAAAAG
AACAACACATGTATAATACAATAAAGATACACTGTTCAGAAATGGTCTCCGACTCAG
(2157 bp)

- SilkBase 1999-2023 -