SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR18432c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_SWI/SNF_complex_subunit_SMARCC2_isoform_X2_[Bombyx_mori]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000790 C chromatin
GO:0000978 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0000980 F RNA polymerase II cis-regulatory region sequence-specific DNA binding
GO:0003677 F DNA binding
GO:0003682 F chromatin binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0006337 P nucleosome disassembly
GO:0006338 P chromatin remodeling
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0007399 P nervous system development
GO:0016514 C SWI/SNF complex
GO:0016568 P chromatin organization
GO:0017053 C transcription repressor complex
GO:0021882 P obsolete regulation of transcription from RNA polymerase II promoter involved in forebrain neuron fate commitment
GO:0031492 F nucleosomal DNA binding
GO:0043044 P chromatin remodeling
GO:0043234 C protein-containing complex
GO:0045892 P negative regulation of transcription, DNA-templated
GO:0045893 P positive regulation of transcription, DNA-templated
GO:0071564 C npBAF complex
GO:0071565 C nBAF complex
GO:0090544 C SWI/SNF superfamily-type complex
Transcript
Level		FPKM:13.37 TPM:13.10
ORF EntryO_TrvaFAMAMG22098_complete:A_TrvaFAMAMG_TR18432c0_g1_i1
Sequence
(Nucleotide)
TTTTTTTTTTACTTCTTACCACTTTATTTCCTAACTCATTTGAGAGTTAACTTAGATTAT
AAATTATAATTCCTTAAACTATTAATCTTAATACTAAAAAAGTCGATATTTTGCACATTA
AACAAACATACAGTTTTCTACACAATCTAATCAAAGTTTTCACATCACATTCACAAAGAT
CTAATTTTCAATTTCATACATAAAATGTCAAAATATATTCCCCAGAAATATGATACGTAG
ATTCGAATTGATATCTGGAGGAATAAAAGCTTGAAACAAACAGCCTATTTTTTACTCCAC
ATTTTTCAATTTATAAAACGACAACCAATTACAATGAACTGAGAAATTTCTGAGAAGTAA
AGTTATTAATATTGATAAAATAATGACTGACAATATTGTTCTGAAGAAAGTTACACCGAA
TTTTCATTACATGGTTATTGACCGCAGCCGCATCCGTTAAGGACGCCGCGTGTTCCATAG
ATTGTAATTTGGGAGATGGTAGCAGTGAGCGGGATAGAGCCTTTATTTCCATCTCCCCCT
CATCATTACAATAGTAATATTTGTAATCGGCTAGCATGTGTTTGTTTACGCGTGCGTGGG
TTGCGGCGGCGGCTGCGCTTCGGGTACGGGTTGTTGTTCTGCGTTGGGAGCCGCCGCTAA
ACCTGCATTCTCAGCTTGTAACCTTTGATGAGCTTGATGTTTGGATCTGAATTCAGCTGC
TTTGAGTTGTTCCAAGTGGAATTGTTGTCGTTCTTGTATTAACTGCTGGCGTTGGTATTC
GAGACCTTCTCTCTCCCTCTCCATAGTGGCCTCTAATTCCTCGAAGTGCCGGAGCTTGAT
CTCCAGTTTCTTCATCTGCGTCTCGACGAGCAGCGCGACGAGGGACTTGATCTTCCGTTC
CTCGACTCCGGCGAGATGCTTGGCCTTGACGGCCGCCGCGGCGAGGGAGGCCGCCGCCGC
GGACTGCAGCTTCGCGTCCACTGCTGCCGGGGCTTCGGGCGGTGGTGGTGATGATGGTTC
TTCCTTGGTTTCCTTTTCTTCAGCAGCAGGTTGTTCAGCAGGCTCCTCTTTTACTTTAGC
ATCTCCTTCTTCCACTTCCATCGGCTCGTTCTTCACTTCAGAACTGCCCTCTTTCTTCTC
ACCGGTGGGTGACAGTTCGGGCGCGGTGCCGGCGATGCCGGTGGCGGCGAGCGCGGCGGG
CGCGCCGTGCGCGGCGGCCGCCTTCACATGCGCCTCCATCATGGCTGCCGGGACCTCGTC
CTTAATAGCAGCAAATTCGTCCATAGCTGCCTTAGTAGCCTTGGCCGCGATGCGAGGGTC
CACCACTGAAGCGAGGAAGGCCACGGTGCTCATGACGGGGTTACCAGCCTTGCTGAACGG
AATGGGCTGGTACGCTAATGGACCCAGGACTCCACCTGAACCTGGTTCATCTAAATAAGG
TTCTTCAATGGGCAGTCTCAGGAAGTGCAGGATACACTCGTCCTGTGTCCTGGTGCCGAC
GTGTGCTGCGACTCGGTTCCAGTCATCGCGGTGCAGCTCCAGCCCCTCCAGCAGCAGCAG
TGTCTCCTGGTCCGTCCACTCGCGACCACGCTGACCGCCGCGGTACTGATCTAGTTTGAT
CCCCGGCGCAGATGGTAGTTCGGGCACCGGCTCCACCTTGAGGGGCGCGGTGGGGGGAAC
TCCACTCTCAGCGCCGTTCGGTAAACCTGGCTCCAACTTAGGAACATTTTCAGCTGGTCT
GGGTTGCGCGGGTCTCGTGATGAGCGGCTGCAGGCCGGACGGCGTGTCGGAGAGCACGTG
GAAGTGTGAGGTGGGAGGCGGACCCATCGCCGTCGGACGAGAATCAGTCTCCAGCTGATA
ATTAACAAGTCCCCACTGTTCGAGGAAGCCGTGTACTCTCATGATGGCGCACACGTCGCC
GGCCAGGTTGCGGCGACACGCGGTGCTCGTGAGGTACTCAGTGGGATTCAAACGGTATGT
GTCGATCATGAAGTTTCTGTATGCTAAATAAATTTCAGGTGTCTTGGACTTATTCTTTCC
ATTGAAGAACTCGGGTAATGCTCGCTTCTCGATCATGTGTATGGAGTTGTAGTCGAACCA
GGCGGAGTACGATGGAACCACGATGTGATGAGTTTGATCCGTCACATTGTCTTCTAATTC
TTCTTTAGTTAGCATTTCCTGTGTATTAGAATCCGAGTGTTTCCCTTGCGAGTCGTCGTG
CGAGTCGGGATGCGGCGCGGGAGTGGGCGGAGCCTCCACTGCGGGCGCGCTGTCCGCCGC
ACTGGCGCCAGTACTCGCGCCAGCACTGCCACTGGCGCTGGTACTCGCCGCGCTGGACAC
CGGGGCGGGTTCTGGCTGTTTCTCAGGTTCAGGTGCGGGTGTGACGTCAGTGTTGTCACG
TGACGCGGCGTCTTCCTCCTCATCCACGTCATTCTCGCGACGCTTTGTAACTCGACTCTT
CCTTTTGCTGTGTTTCTGCGGCGGCGGTGACGGTGATCGCTTCCTCTTGCTTCCTTTCTT
GCTTTTACTTGACGGCTCGGCGCCGGGGATCAAGTCGTCCACAGAGAGACGTAGCTTGTG
GTTCTTTTTCTTCCCGTGCGAGTCGACCTCGTAGTCCTCCTCGTTCATCCACTCGTTGTA
CTGCGGCAGGTCGAGCGCCCAGGACGCCGTGACGCGCCACGGCTCGACGCGGTTACACTC
CCAGTTTACTGACTCCGGGACGTCCACCGGTAGTTCAGTCTGCGCCCAAGTATCGTGACT
GTCGGGCAGATAGTACCAGTGTACCAGCACGTGGTTCCCGCGCTTGAACACGGGCCGCGC
GTATTCGTCCTCGTGAGGGTCCAGCGTTGGGTATATTATGTGAGTCGCGTCCTCTTCGTC
CTCACATATTTCTCCCTGGTGGTTAACCACGATGTCTTTAACTTTGTTAGCGGTTGCCTT
ATCAACCTCCGGCCGTATATAAACGCAAGGGGAACGGATGACGTCAGAACCGAGCAAAGA
CGACTCGATCTCCATCATCATTTGCACGTTCAGATCTTTGCGCGAAGGGTTCTTACCGAC
CTGGAAGTCGAATTTACGCCACCGCTGCTCCGACTTGAAACGGAACATGGTGGCGAACAC
CGTGCACAGTGAACCGCCCGGCTTCATGTCCATGAACACTTTCATCGGAAGTCTTAAAAA
GGGTGGATCGGAGGCATTCTTGCCTAGTTTGTTTTCTTGATACTGAATGAGTTGAATAAC
CAGTTGGGCCAATCCTTCTTTAGTAGGGGGATCAGTTTGGACATGCTTTTTACAATTTTT
TTGTAACCAAACACGAATCAGATCAAATTGGGATAGCGTTTCTGGTGACTGAAAGTAATC
CGTATTCGGACCACCGTCCTTTTTAGGGCCTATGGTCGTCATAGTAATTTAAAATCCAAC
AATTGCCGCACACAAACTATGATTTACTCTTCAAATTTTAGAAAAAATAAGTGAAAAACA
ATCAGAAATCAACGAAGATGCCGCGACGCCGTTTCGATTTCAG
(3523 bp)

- SilkBase 1999-2023 -