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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR18058c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		hypothetical_protein_KGM_15573_[Danaus_plexippus]
Ontology
GO:0000166 F nucleotide binding
GO:0000244 P spliceosomal tri-snRNP complex assembly
GO:0000245 P spliceosomal complex assembly
GO:0000387 P spliceosomal snRNP assembly
GO:0000398 P mRNA splicing, via spliceosome
GO:0000902 P cell morphogenesis
GO:0003676 F nucleic acid binding
GO:0003723 F RNA binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005691 C U6atac snRNP
GO:0005737 C cytoplasm
GO:0006334 P nucleosome assembly
GO:0006396 P RNA processing
GO:0006397 P mRNA processing
GO:0008380 P RNA splicing
GO:0010468 P regulation of gene expression
GO:0015030 C Cajal body
GO:0016607 C nuclear speck
GO:0017070 F U6 snRNA binding
GO:0030621 F U4 snRNA binding
GO:0030624 F U6atac snRNA binding
GO:0042393 F histone binding
GO:0044822 F RNA binding
GO:0046540 C U4/U6 x U5 tri-snRNP complex
GO:0048872 P homeostasis of number of cells
GO:0071001 C U4/U6 snRNP
GO:0071002 C U4atac/U6atac snRNP
GO:0071425 P hematopoietic stem cell proliferation
GO:1903586 P positive regulation of histone deubiquitination
GO:1990381 F ubiquitin-specific protease binding
Transcript
Level		FPKM:13.95 TPM:13.67
ORF EntryO_TrvaFAMAMG21899_complete:A_TrvaFAMAMG_TR18058c0_g1_i1
Sequence
(Nucleotide)
TTTTTTTTTTTTTTTTTTTTTTTTAATAAAACAAGTTCTCCTTTATTTGGATCTCCCATA
CACTTACGTTTTTTACGCTATCTTACACTAAAGAATAGTCACTGAGGTGTGATCGTAATA
ATTAGTTGAGTAAACATATTTTAAATAGGTTTCTACTGTCATCTACTATATTACATCTGG
CTTGTCTCGTGAAACAATAAAAAAAATCAACAAAAAACAATACAACAGTCTTCGATTTAC
AAGCAGATTTTGAGACATTTAGTACCAGATGGATTTATAAAAGAAGCTGAGTAATAAGCA
GAGAGACTATGTAAATGCTGGTAATTTTATAAGTGAAATACCAGCTTTTATTGCAGTTTT
ATACAATTTATTTACATTCACGACGCATAAAACAGATCTCGATCATAATCATTCACTCAC
TCATTCACTTTAGCGATAACAATCAATCTAATCAGTCACTCTTTTACTTCTCATATAAAC
GTGAGCTACAGTAAAAGGTATCAAATTGATACTGTAAGGTTGATGACTATCAATATCTAT
AAAAAAAATCAAATGACTTAATCTTATTGAAGGCTTTCCTTGAACTTATACAGAAAAGAT
ACTAAACGCCTTCAAAAGTTTAAAATAGTAAAGCTAAAAAGAGAATCGATTAAAATACAG
ATTAAGAATGTTATTTACTATGTTAAATGAACTTTGTGAGGTCATGGTTCAGTTTTGTGA
GGATGTTGATGCGAGCATTTTTTTGAAGTCACTGTTAGAGAGTGGTCGTTTTTGATTGCC
GTTAGCCTGCGCGGGCGGTGCGGGCGGCGCGGCCGACGTCGGGGCTGCGCTTGTTGAGGC
TTGTTGTAGCGCGCGGGGTAAGAAACTTAGCTGAGTTCGTCGCATGCCTCCAGTGACGGG
TTTGTTGTTCCCGAGTGGTTTGTTAGTTCTGGGCGGCGGTTTGCTGATCGCTACTTCTAT
TTTCCTATCGCCGATGAGCTGACCGTTCGTGGCGGCTATGGCCTTCTCTGCTGAGATCTC
GTCTTCATAGTCGACGTACGCTAAACCTTTTGGTTTACCGTCCTTAAATGTGACCACTCT
AATGTCCTTCAAATTGCCGTGTTTCTCAAATATCTCAGTCAAACTTTTCTTGTTGCAGTG
TGAGTAAGGCAGGTTCATAACAAATAGTTTGTTTTTCTCCATTGTGGTGGCGTATTTGAA
ACTCGGTTTAGATTTGTCAGCTGAATACCGCGATAAGAACATTGGTCTGCCGTCTAAGGG
GGTTCGGTCGTGTTTCAAAGCTTCCTCAACTGAATCCGCAGTCTTATATTGACAATAGCA
AATAGATCCACCAAATGATTTAACTCCCATTTTCACTCGTAAATCTACGATTTCACCAAA
CTTCGACAATTCCTCTCGTAATTTCTCCTCATCAAATTTGAAATCTAAATTACTGACAAA
TAAAGTACAGGCTTCTGTGCTTGACGATTCTGCCGTTTCAGACAACTCGGTACGTTGTTT
TTTGTTCTCAGCAACTTCAGTCTCATCATCTGCATGTGATCTCTTCACACCAGAACTAGT
TTTGTCCTTGACACTCACAGACACCTCCTTAGGCTCCTCTCTTTTCTTCTTAACGTCAGT
GACTTCTTCATCATTGGTCAATTTTCTTTTACCTTTCTGTTTAATGTCTGTCTTTTTGTT
TTTATTGTCATATTTTCCTTTTTTGTTGTCTTTTGTTTTACCAATCTCGTTTTTGTTGAG
CATGTTGTCTTTCATAGCTTGATATTGCTTTCTCCATTCACGTATTTTTAACTCGCAAGT
TTCTTGGCACTCTGTACTAGTGTCCAGTTTCCCATAGTCTCGTTCGAAGTCGGTCCAGAG
TCGTGCGACGGCGGGCGGGTAGTCGGTGACGGCTCGGAGCGCGCGACGCAGCAGATCACG
AAACTTGGACTCCGACGGAGGAGGCGAACGATTGCTCTCTAGATTTATTAACGCCTCCCA
ATATTTGGACATTGTCTTGTTTTGTCCGTACTTGAATAACTCTTCAAAAATCTCTTTCCC
ACGCTTTGGTGACTCCAAGAATTTGTATTCAATTCTAGCCCAATACATCGGAATCTCACA
GTCATTTGCTTCATCTCCCCATGTCTCTGCGAGTGAGTCCCAGGCCAGCCTAAATGTGCG
TCGTAACCTCTCGACTTGTTCATCGTCAGTGTACTTGGTGTTCCGACGCACGTATTCGAG
ATAATTCAACCATAAATTTTCAGCCTCTTTATAAGATTCCAAACCCTTTGACAGAGCTGT
TTCGAATATGGATTTGACCTCATCGAAATCTTTCTCTTCATGTTCTGCCTGCTGCATCTT
AAGGGTCCAGAATATGTGTTTCTGTGGGCATCGTCGCGTGCACAACTCGAGGACCCGCCA
GTAACTTGCACGCGATGACGTCAGCTGCGTGTGTCTTGCGAACTCAAGCAGAAGATCGCA
CACGTCCGGGTTTAGGAGACATTCGTATGTCGCGCGATCGTATAAAATCCTGAGCAGTCC
ATCACTGTCACATTCAGCATACTTCTCCTCAGCTGACAACTGCTTCACAAGATCAATATA
TTCCTGATATATTTTGTAATTCTCCATATAACATTGAGTTGTTTTTGTTTTAATTTCATA
TGGTATAATTCGTTTTAAAAAATCCACAGCTGCCTTGTGTTGTTGTTCAACCTTTTCAAT
GTACTCTTGTTCACGAATATCTTTAGCAAAATCTTCAAATAGATTCCAAGCTTCTTGGTT
CCTGGTAATGGGTAATGAGGCCACAACCTCCAAACAACGTAACACTCGATCTTCTTGTTC
TTTGTAAGCTGAATCTTCCTTGCATGTTTCATTCAATTGTGATTTTTCAAAGTCAATTTT
TAAGTCCCACAGTACTTTTCCAGAATATGGATCAGAACCACCACGACGCAGAACTTCATC
AAGCTGTGCTCGAATTTTAGGTATCTCATCCAATTGCAGCGCCCATGAAGCCCATCTTGA
TAAGATTGACATGGAATAGCAATCACAGGTGGCTTTATAGAACAAATTGGCTATTATATT
CTCTTCAGAGTGTGAAATGTTTTCTTCTGTTCTCAGCCATAATAACCAATGATCAACTTT
AATTACTGACATTTCCCACAACCGTTCAAATGCTGCTCGCCAGCGACCCAGCTCTGACAG
GCGCCACAAAGCTTGGATTAATTCAATGTGGTCTTCATAGTTGAAGGGATGTGATGTGAT
TCTGTGTTCATATTCAGCCACTTTCCTCTGCAAATCTCCCTCCAATATTTCATCTTCTGA
ATCTGGATCCTGCTCGCCGTCATCCTCTTCAACCACTACTTCGATTTCATTTTCTCCTTC
AGAACCATTCTGAATTTCATCTTCAACTATCGCCATTGTTTATCACACGATGCACGAAAG
TAATCAATAAAATTGTGTATTTGTATAGTTTTGTAACAAATAAAATTCACAAACGAAATA
CGAATATGGCGATTGCCG
(3498 bp)

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