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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17948c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_transcription_elongation_factor_SPT5_isoform_X1_[Amyelois_transitella]
Ontology
GO:0000122 P negative regulation of transcription by RNA polymerase II
GO:0000176 C nuclear exosome (RNase complex)
GO:0005634 C nucleus
GO:0005694 C chromosome
GO:0005700 C polytene chromosome
GO:0005703 C polytene chromosome puff
GO:0005705 C polytene chromosome interband
GO:0006351 P transcription, DNA-templated
GO:0006355 P regulation of transcription, DNA-templated
GO:0006357 P regulation of transcription by RNA polymerase II
GO:0006368 P transcription elongation from RNA polymerase II promoter
GO:0007052 P mitotic spindle organization
GO:0007095 P mitotic G2 DNA damage checkpoint signaling
GO:0007549 P dosage compensation
GO:0008023 C transcription elongation factor complex
GO:0032044 C DSIF complex
GO:0032784 P regulation of DNA-templated transcription, elongation
GO:0032785 P negative regulation of DNA-templated transcription, elongation
GO:0032786 P positive regulation of DNA-templated transcription, elongation
GO:0035101 C FACT complex
GO:0045944 P positive regulation of transcription by RNA polymerase II
GO:0046982 F protein heterodimerization activity
Transcript
Level		FPKM:10.72 TPM:10.51
ORF EntryO_TrvaFAMAMG21842_3prime_partial:A_TrvaFAMAMG_TR17948c0_g1_i1
Sequence
(Nucleotide)
CGGGGAGTGGTTCTGAGGCTGGTCCGGGTGTTCGCATTTTCATCATTTTTTCAATTGTTT
CTTTAAATATTTCTTCAATGCGTCGCGTAAATTGACTTCCAACCAACAATGTCCGATTCG
GAAGGCAGTAACTTTTCGGGGAGTGGTTCTGAGGCTGGCAGTGTAGCATCAAACAGGTCA
CGACGGAGTCGCGCGTCGAATCGTTCGGTTAGATCGCGTTCTGTGTCTCGTTCGAGGTCC
AGGTCTAGGTCTGGAAGCCGCAGCCCCTCCAGGTCACCTTCCCGATCACGATCTAGATCA
CGCTCAAGAAGTCGGTCAGTAGCGTCTGATGCCAGCAAAAACAGAGACGATGAAGCGAAG
GAAGCCTCAGGTGATGAGGAAGTTGAGGATGAACAAGAACCAGAAGGAGAGGATCTGGTG
GACTCTGAGGAGTATGAAGAGGATGAGGAGGAGGAGACCCTGAGAAAGAAACGCAAGAAA
GACAGCCGCTATGGTGGATTCATTATTGACGAAGCTGAGGTGGACGATGAAGTTGATGAA
GAAGATGAATGGGAAGAGGGTGCTCAAGAAATGGGTATTGTCGGAAATGAGGTGGATGAA
ATCGGACCTACGGCTCGGGAAATAGAAGGGCGCAGGAGAGGCACCAACCTCTGGGACTCA
CAGAAAGAAGAGGAGATCGAGGAGTATCTCCGGAATAAATATGCTGAGGAATCTGCAGCA
CTCCGACACTTTGGTGAAGGCGGGGAGGAGATGTCCGATGAAATCACACAACAAACTCTA
CTTCCTGGCATTAAGGATCCTAATCTATGGATGGTTAAGTGTAGAATAGGAGAGGAAAAA
GCCACAGTTTTACTATTGATGCGGAAATTTATAGCCTTCCAGTTCTCTGAAGAACCCTTT
TTGATAAAGTCGGTTGTAGCACCTGAAGGAGTAAAAGGTTATGTTTATATCGAAGCTTAC
AAACAAACTCACGTCAAAAATATAATAGATAAAGTAGGTACACTCAAGATGGGTATATGG
AAGCAAGACATGGTGCCTATCAAGGAAATGACTGATGTCCTCCGTGTAGTGAAGAAACAA
TCTGGTCTCAAACCTAAACAATGGGTGCGATTGAAGAGAGGTTTATACAAAGATGATATT
GCTCAAGTTGACTATGTAGACTTGGCTCAAAACCAAGTCCACTTGAAACTACTTCCTAGA
ATAGACTATACAAGACTGAGAGGTGCTCTGCGGACACAGCAGAGTGATAGTGAAGCTGCC
AAACGTAAGAAGAAGAGGAGACCACCCGCCAAACCCTTCGACCCTGAAGCCATCAGAGCT
ATCGGCGGAGAAGTCACCTCCGATGGTGACTTCCTCATCTTTGAAGGCAACAGATACTCA
AGAAAAGGGTTCCTGTACAAAAACTTCACAATGTCCGCAATATTATCAGAAGGAGTGAAA
CCATCGCTAACAGAGTTGGAGAGGTTCGAGGAGCAGCCTGAAGGCATCGATATTGAGTTG
GCCGCGCCCGCCAAGGACGACCCCGCCGGACTACACTCCTTCTCAATGGGAGACAACGTA
GAGGTGTGCACCGGTGACCTGGCCAATCTGCAGGCTCGTATTACAGCCATTGACGGCTCT
ATGATCACTGTCATGCCTAAACACGATGGACTCAAGGATCCCATTGTGTTCCACCCTTCA
GAGTTACGCAAGTACTTCAAAATGGGCGACCACGTGAAGGTGGTGGCCGGCCGATACGAA
GGAGACACCGGCCTCATCGTGCGCGTGGAGCCGCACCGCGTGGTGCTGGTGTCCGACCTC
ACCATGCACGAACTGGAGGTGCTGCCCCGCGACCTGCAGCTCTGCTCCGACATGGCCACC
GGTGTCGACTCGCTCGGACAGTTCCAGTGGGGCGACATGGTGCAGCTCGACCCGCAGACC
GTCGGAGTCATCGTTAGACTTGAGAAGGAAAACTTCCATGTGCTCGGCATGCAGGGTAAA
GTTATCGAGTGCAAACCTCAGGCGCTACAGAAACGACGCGAGAACCGGTTCACGGCCGCA
CTCGACTCCGAAGAGAACACGATACAAAAACGTGACATCGTGAAAGTAATAGACGGACCT
CACGCCGGCCGTGACGGCGAGATCAAACACTTCTACCGAAACTTTGCTTTCCTGCAATCT
CATATGTATCTTGACAACGGCGGCATCTTTGTGTGCAAGACGCGACATCTGCAGCTGGCG
GGCGGCGCCAGGGGGAACAACGCGGCCGCCGCCGGACTCACGCTCGGGTTCATGTCACCG
CGCATCGCCTCTCCCGCGCACCCCGGTCGGGGCGGGGCCTCGCCGCGCGCCAGGGGAGGC
CGGGGTGGCGGGGGGCGCGGCGGCGTCACCAGGGACCGCGACCTCATCGGACAGACCATC
AAGATCACGGGCGGACCCTACAAGGGCAACGTGGGCATCGTCAAGGACGCCACCAGCAGC
ACGGCGCGCGTGGAGCTGCACTCGTCGTGCCAGACCATCTCCGTGGACCGCGGGCACATC
GCGGGCGCGGCCGGCGGCGCGGCGGCGGGCGGCGCGTCCTCGTACTCGCGCACGCCGTCC
CGCACGCCGGGCGCGGGGGCCGCCACGCCCACGTACCGCGACACCGGCATCAAGACGCCC
ATGCACGGCGCCGCCACGCCGGTGTACGAGGTGGGGTCGCGCACGCCTCACTACGGCTCG
TCCACGCCGGCGCACGAGGGCTCGCGCACGCCGGCGCACGGCGCGTGGGACCCGAGCGGC
GCGGCGACGCCGGCGCGGGTGGACTTCGACTACGAGCCGGACGCGTACGGCGGCGGGTTC
ACGCCGGGCACGCCGGGCGCCATGTACGGCTCGGACCACACGTACAGCCCGTACAGCGAG
CGCGCGGAGGGCTGGGCGGCGCCGGAGCTGGCGGTGCGGGTGCGCGCGGGGGAGGGCGCG
GGGGCGGG
(2948 bp)

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