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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17727c3_g1_i8
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha_chain_CG42342-like_isoform_X5_[Bombyx_mori]
Ontology
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005581 C collagen trimer
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
Transcript
Level		FPKM:0.56 TPM:0.55
ORF EntryO_TrvaFAMAMG21687_complete:A_TrvaFAMAMG_TR17727c3_g1_i8
Sequence
(Nucleotide)
TGTCGACCGTCAACCGGGAACTACGTCCGTACGCGATCCTACCGCGAAAACATCGAGATC
AAACACGTCGAACGAACACCAACGAATAAACAAACGTTCTAAAAAAACGAATCTGTGATT
GTGTTTAGCAAATGGGTTAAAAATGTCTTTCTAAATAATTTAATCTAATTTTTAATTAGG
CCAAAATGATACTCAAAATTGGGGGCAAGCTGCCCTCCATCACTAAACAGACAGACAAAG
AGACGAAAAAAGATGATAAAAAGAAAAAAATAGAGAAATGCGACGAGAGGTGTCCTGGAG
ATCCGTGGGCATACTGTGTTGTGTTGTGGTGTGCTTGTGCCATGAGCCTGATATCCAGCG
GATACAGTTTGTACAAACAGCAAGGCTTGCAGGACAGACTGTCGTTGTTAGAGGAACAGC
ACTTAGCGCTGAGGAGTGCGGTGCTGGAGCCACAGCAGCCGCTGGTGGAGAGACTTCGCA
GGGAAGTGCTGTCCAGATCAGACTGGAGACCGAGGAGGAGTATCAGAGATTATGGAGACT
GCGTTTGTCCTGCAGGTCCTCCCGGGCCGCCAGGGAAGAGAGGGAAGAAAGGGAAAAAAG
GAGATTCAGGGGAACCCGGACCACCGGGCTTGACGGGCGCGCCGGGCAAGAACGGATTCC
CGGGTTTGAGGGGCGAGAAGGGCGAACGAGGCTTCATGGGACCGATCGGGTTAGACGGAC
CAAAGGGAGATCCGGGTCGGCCCGGAGACAAGGGACAGAAGGGTGAGCACGGCAGTCCAG
GGTTCGATGTGTTCTCAGCCGTCAAGGGGCTGCAGGCGGCCGGACACAACATCTCCGCGC
ACACTGTCATACAACTCAAGGGTGAACCAGGGGAGCCGGGACCACCGGGACCCCCCGGAC
CGCAGGGGGGCGAGGGGCTGCCGGGACATGATGGACGAGGGGGACCACCGGGACCACCCG
GACCGACCGGACCCTCCGGACCGACTGGACCACCGGGACCTATTGGACCAATCGGACCAT
CTGGACCACTTGGACATAAGGGTGACAAGGGCGACAAGGGCGAGCGAGGGTTCACGACGA
CGTTAAAGGGCGACTCGTTCCCGACCGGCATCATCGAGGGACCGCCCGGACCACCTGGAC
CTCCCGGTCGAACGGGCGAGGTGGGTCCCCGCGGTCCCCCGGGGGCGGACGGTTCGCCCG
GTCTAGCGGGCCTGCCTGGACCTCCCGGGAAACCGGGTGAGCCGGGACCTAAAGGAACAA
AAGGAGAATACGGAGACATGGGGTCGCCGGGCATGTTGGGAGCACCGGGCCTGCCGGGAC
CCCCCGGGTACCCTGGACTCAAGGGGGAGAAAGGCGAAAAAGGAGACTCGAAATACAGAA
AGCTGAGAAGGAGGCAGAACTTGCAGGGAGACGCGACCGGGTACGAGCTCTACGGACACG
ACATGATGCTGGGACCACCGGGCCCGCCGGGTCCGTCCGGTCCCCCGGGGGTCGCCGGTC
CGCCTGGGATCAAGGGGGACAAGGGAGAACCTGGCATTCGAGGCAAAGCGGGTGACCGAG
GAGAAAAAGGCGACGCCGGACCAATGGGATTACCTGGTCCGGTGGGTCTCCCCGGGGAGC
CGGGGCGCGCGGGGGACGCGGGGACCAGGGGTCCAGTCGGGAAGCGCGGGCGGAAGGGTG
ACAAGGGGGACAAGGGGGAGCAGGGGGTGCCGGGGCTGGACGCGCCCTGCCCGCTCGGAC
ACGACGGCCTGCCGCTACCTGGCTGCGGCTGGAGACCCAACAAGGAGGCGATGATGCAGT
GGGTGCGACGGAGACTCGACGTCGACAACGATCTCCCCGTGTGACCTCCGCGCCGTCCCG
CATCGTCCCGCACCGTCCCGCACCGGACCACCGCGCCGGGGACGCATGCAACTTGAACAC
CTGCCTGTTTACTATTTAATAACATTCATTTACTTTCCTTTCAATAAATTCAAGATTAAC
GTTAGACGTGTTTTCTTCTTTTTTAAATACTTTGTGTTACTTTTTGTACACAGTAATGTG
GAACGAAGGACCGTGTACAATGATGTTTCATAGTATGTCGTTAAGTTATATACTACACGT
TACTGATGTCTAGTTACATCTCTTCATTTGTTGTATGTAGTTAACACTAGGTATAAGAAC
TGTAAATATTAGATGTAACATAATCTATAAGTACTGGTTCACTAGTAATACTTCTATTTC
TGAATTTGTCATTCCTTATCTAATTATAATATTTATTTAAATTGAATTTTTTATGTAAAT
AAATTTGTAAGGACTACTGTAATTTTTGTATTGTAATTTTTGATATCATTTATAGAGTAT
GATGAAGAAATAAGTACAAATAATAATAATGTTGATACTCATAGTACCGGTAGTGTGAGA
CAGTACTCATTGATACAGGTGGTTTGTGTGTACATATGAAGTAGTTGTTAATTACTAAAT
ATAACGATGACAATAAACATTCTGGAACAGTAAAAAAAAAAAAAAAAAAAAAAAACAGTA
AGGCAGAGGCGATGATG
(2537 bp)

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