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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17727c3_g1_i7
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha_chain_CG42342-like_isoform_X5_[Bombyx_mori]
Ontology
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005581 C collagen trimer
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
Transcript
Level		FPKM:1.97 TPM:1.93
ORF EntryO_TrvaFAMAMG21683_complete:A_TrvaFAMAMG_TR17727c3_g1_i7
Sequence
(Nucleotide)
TGTCGACCGTCAACCGGGAACTACGTCCGTACGCGATCCTACCGCGAAAACATCGAGATC
AAACACGTCGAACGAACACCAACGAATAAACAAACGTTCTAAAAAAACGAATCTGTGATT
GTGTTTAGCAAATGGGTTAAAAATGTCTTTCTAAATAATTTAATCTAATTTTTAATTAGG
CCAAAATGATACTCAAAATTGGGGGCAAGCTGCCCTCCATCACTAAACAGACAGACAAAG
AGACGAAAAAAGATGATAAAAAGAAAAAAATAGAGAAATGCGACGAGAGGTGTCCTGGAG
ATCCGTGGGCATACTGTGTTGTGTTGTGGTGTGCTTGTGCCATGAGCCTGATATCCAGCG
GATACAGTTTGTACAAACAGCAAGGCTTGCAGGACAGACTGTCGTTGTTAGAGGAACAGC
ACTTAGCGCTGAGGAGTGCGGTGCTGGAGCCACAGCAGCCGCTGGTGGAGAGACTTCGCA
GGGAAGTGCTGTCCAGATCAGACTGGAGACCGAGGAGGAGTATCAGAGATTATGGAGACT
GCGTTTGTCCTGCAGGTCCTCCCGGGCCGCCAGGGAAGAGAGGGAAGAAAGGGAAAAAAG
GAGATTCAGGGGAACCCGGACCACCGGGCTTGACGGGCGCGCCGGGCAAGAACGGATTCC
CGGGACCGATCGGGTTAGACGGACCAAAGGGAGATCCGGGTCGGCCCGGAGACAAGGGAC
AGAAGGGTGAGCACGGCAGTCCAGGGTTCGATGTGTTCTCAGCCGTCAAGGGGCTGCAGG
CGGCCGGACACAACATCTCCGCGCACACTGTCATACAACTCAAGGGTGAACCAGGGGAGC
CGGGACCACCGGGACCCCCCGGACCGCAGGGGGGCGAGGGGCTGCCGGGACATGATGGAC
GAGGGGGACCACCGGGACCACCCGGACCGACCGGACCCTCCGGACCGACTGGACCACCGG
GACCTATTGGACCAATCGGACCATCTGGACCACTTGGACATAAGGGTGACAAGGGCGACA
AGGGCGAGCGAGGGTTCACGACGACGTTAAAGGGCGACTCGTTCCCGACCGGCATCATCG
AGGGACCGCCCGGACCACCTGGACCTCCCGGTCGAACGGGCGAGGTGGGTCCCCGCGGTC
CCCCGGGGGCGGACGGTTCGCCCGGTCTAGCGGGCCTGCCTGGACCTCCCGGGAAACCGG
GTGAGCCGGGACCTAAAGGAACAAAAGGAGAATACGGAGACATGGGGTCGCCGGGCATGT
TGGGAGCACCGGGCCTGCCGGGACCCCCCGGGTACCCTGGACTCAAGGGGGAGAAAGGCG
AAAAAGGAGACTCGAAATACAGAAAGCTGAGAAGGAGGCAGAACTTGCAGGGAGACGCGA
CCGGGTACGAGCTCTACGGACACGACATGATGCTGGGACCACCGGGCCCGCCGGGTCCGT
CCGGTCCCCCGGGGGTCGCCGGTCCGCCTGGGATCAAGGGGGACAAGGGAGAACCTGGCA
TTCGAGGCAAAGCGGGTGACCGAGGAGAAAAAGGCGACGCCGGACCAATGGGATTACCTG
GTCCGGTGGGTCTCCCCGGGGAGCCGGGGCGCGCGGGGGACGCGGGGACCAGGGGTCCAG
TCGGGAAGCGCGGGCGGAAGGGTGACAAGGGGGACAAGGGGGAGCAGGGGGTGCCGGGGC
TGGACGCGCCCTGCCCGCTCGGACACGACGGCCTGCCGCTACCTGGCTGCGGCTGGAGAC
CCAACAAGGACTCGGCGCCGGTGTTACCGCCGCGCGAGGGGACGCACGACGTGCTCTCCG
AGGAGGAGGATGAGGAGGGGGGTGCGGGCGCAGGCGAGGGGGGCGGGGACGGCGGCGAGG
GGGGCGAGTACGACGCGCGGGAGGACGAGCTCGACGCGAACAGGGACTACGACGACTACA
CGGAGAACGCACACCTGCCGCATCATCACGACTAACACATTCATACAATCCTCTTTCTTT
AGTTTATACATCGCAATTAATCATTCCTCATTCCCCTTTTTCTGCTGTACTCCTACTGTC
CTTGAACACATACATACACATAGGCTCACAACACACAAAAAGTCATACCTCCAGCTCGCG
GGGTGACTCACAGGACACACTGTCTCTCAAGAGGAGAGGATCTGACAGGAGATCAGTACA
ACTCGCTATCTACAGTAAGGCAGTAAGCAAACACTAACCTAACCATGCAGTAGTAGTAGT
AGTAGTAGTAGACTCAACTAATTATGTTTTAGTGCATGCCATACTAATAATAATTAATTC
ATGTGGACGCAGCTATTGACAAAAATTGATATAAAATAATTAAAAACATTAAAGACAGTG
AAATTTAAAATCTGTCATCAATTGGTTCGTATTCCGTGTGAGTAAGATCAGTATCTGTGT
GTAGGAGGCGATGATGCAGTGGGTGCGACGGAGACTCGACGTCGACAACGATCTCCCCGT
GTGACCTCCGCGCCGTCCCGCATCGTCCCGCACCGTCCCGCACCGGACCACCGCGCCGGG
GACGCATGCAACTTGAACACCTGCCTGTTTACTATTTAATAACATTCATTTACTTTCCTT
TCAATAAATTCAAGATTAACGTTAGACGTGTTTTCTTCTTTTTTAAATACTTTGTGTTAC
TTTTTGTACACAGTAATGTGGAACGAAGGACCGTGTACAATGATGTTTCATAGTATGTCG
TTAAGTTATATACTACACGTTACTGATGTCTAGTTACATCTCTTCATTTGTTGTATGTAG
TTAACACTAGGTATAAGAACTGTAAATATTAGATGTAACATAATCTATAAGTACTGGTTC
ACTAGTAATACTTCTATTTCTGAATTTGTCATTCCTTATCTAATTATAATATTTATTTAA
ATTGAATTTTTTATGTAAATAAATTTGTAAGGACTACTGTAATTTTTGTATTGTAATTTT
TGATATCATTTATAGAGTATGATGAAGAAATAAGTACAAATAATAATAATGTTGATACTC
ATAGTACCGGTAGTGTGAGACAGTACTCATTGATACAGGTGGTTTGTGTGTACATATGAA
GTAGTTGTTAATTACTAAATATAACGATGACAATAAACATTCTGGAACAGTAAAAAAAAA
AAAAAAAAAAAAAAACAGTAAGGCAGAGGCGATGATG
(3157 bp)

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