SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17727c3_g1_i2
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_collagen_alpha_chain_CG42342-like_isoform_X5_[Bombyx_mori]
Ontology
GO:0003674 F molecular_function
GO:0005575 C cellular_component
GO:0005581 C collagen trimer
GO:0005886 C plasma membrane
GO:0008150 P biological_process
GO:0016020 C membrane
GO:0016021 C integral component of membrane
Transcript
Level		FPKM:1.32 TPM:1.30
ORF EntryO_TrvaFAMAMG21664_complete:A_TrvaFAMAMG_TR17727c3_g1_i2
Sequence
(Nucleotide)
TGTCGACCGTCAACCGGGAACTACGTCCGTACGCGATCCTACCGCGAAAACATCGAGATC
AAACACGTCGAACGAACACCAACGAATAAACAAACGTTCTAAAAAAACGAATCTGTGATT
GTGTTTAGCAAATGGGTTAAAAATGTCTTTCTAAATAATTTAATCTAATTTTTAATTAGG
CCAAAATGATACTCAAAATTGGGGGCAAGCTGCCCTCCATCACTAAACAGACAGACAAAG
AGACGAAAAAAGATGATAAAAAGAAAAAAATAGAGAAATGCGACGAGAGGTGTCCTGGAG
ATCCGTGGGCATACTGTGTTGTGTTGTGGTGTGCTTGTGCCATGAGCCTGATATCCAGCG
GATACAGTTTGTACAAACAGCAAGGCTTGCAGGACAGACTGTCGTTGTTAGAGGAACAGC
ACTTAGCGCTGAGGAGTGCGGTGCTGGAGCCACAGCAGCCGCTGGTGGAGAGACTTCGCA
GGGAAGTGCTGTCCAGATCAGACTGGAGACCGAGGAGGAGTATCAGAGATTATGGAGACT
GCGTTTGTCCTGCAGGTCCTCCCGGGCCGCCAGGGAAGAGAGGGAAGAAAGGGAAAAAAG
GAGATTCAGGGGAACCCGGACCACCGGGCTTGACGGGCGCGCCGGGCAAGAACGGATTCC
CGGGACCGATCGGGTTAGACGGACCAAAGGGAGATCCGGGTCGGCCCGGAGACAAGGGAC
AGAAGGGTGAGCACGGCAGTCCAGGGTTCGATGTGTTCTCAGCCGTCAAGGGGCTGCAGG
CGGCCGGACACAACATCTCCGCGCACACTGTCATACAACTCAAGGGTGAACCAGGGGAGC
CGGGACCACCGGGACCCCCCGGACCGCAGGGGGGCGAGGGGCTGCCGGGACATGATGGAC
GAGGGGGACCACCGGGACCACCCGGACCGACCGGACCCTCCGGACCGACTGGACCACCGG
GACCTATTGGACCAATCGGACCATCTGGACCACTTGGACATAAGGGTGACAAGGGCGACA
AGGGCGAGCGAGGGTTCACGACGACGTTAAAGGGCGACTCGTTCCCGACCGGCATCATCG
AGGGACCGCCCGGACCACCTGGACCTCCCGGGGCGGCCGGCGCGCGGGGCGAGCGAGGAG
ACGCGGGGACCGCCGGCCCGCCCGGACCCCCTGGCGAGCGAGGCACGCGCGGTAAACGAG
GGAAACGGGGCCCGCCCGGACTCGACGGCATGAAGGGCGCTCAGGGCGAGCCCGGGTCCA
AGGGGGAGCGGGGCGACCCCGGCCTGCCGGGAACAGACGGCATTCCCGGACAAGAGGGTC
CGAAGGGAGACAAGGGGTACAAAGGAGAACCAGGTCCAGTCGGGAAGCGCGGGCGGAAGG
GTGACAAGGGGGACAAGGGGGAGCAGGGGGTGCCGGGGCTGGACGCGCCCTGCCCGCTCG
GACACGACGGCCTGCCGCTACCTGGCTGCGGCTGGAGACCCAACAAGGACTCGGCGCCGG
TGTTACCGCCGCGCGAGGGGACGCACGACGTGCTCTCCGAGGAGGAGGATGAGGAGGGGG
GTGCGGGCGCAGGCGAGGGGGGCGGGGACGGCGGCGAGGGGGGCGAGTACGACGCGCGGG
AGGACGAGCTCGACGCGAACAGGGACTACGACGACTACACGGAGAACGCACACCTGCCGC
ATCATCACGACTAACACATTCATACAATCCTCTTTCTTTAGTTTATACATCGCAATTAAT
CATTCCTCATTCCCCTTTTTCTGCTGTACTCCTACTGTCCTTGAACACATACATACACAT
AGGCTCACAACACACAAAAAGTCATACCTCCAGCTCGCGGGGTGACTCACAGGACACACT
GTCTCTCAAGAGGAGAGGATCTGACAGGAGATCAGTACAACTCGCTATCTACAGTAAGGC
AGTAAGCAAACACTAACCTAACCATGCAGTAGTAGTAGTTGAGTCTACTACTACTACTA
(1979 bp)

- SilkBase 1999-2023 -