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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17698c4_g3_i3
Scaffold_id
NCBI non-redundant
(nr)		PREDICTED:_E3_ubiquitin-protein_ligase_SH3RF1,_partial_[Bombyx_mori]
Ontology
GO:0005515 F protein binding
GO:0005737 C cytoplasm
GO:0005794 C Golgi apparatus
GO:0006915 P apoptotic process
GO:0008270 F zinc ion binding
GO:0016567 P protein ubiquitination
GO:0016874 F ligase activity
GO:0030027 C lamellipodium
GO:0042995 C cell projection
GO:0046328 P regulation of JNK cascade
GO:0046872 F metal ion binding
GO:0048471 C perinuclear region of cytoplasm
Transcript
Level		FPKM:1.71 TPM:1.67
ORF EntryO_TrvaFAMAMG21458_3prime_partial:A_TrvaFAMAMG_TR17698c4_g3_i3
Sequence
(Nucleotide)
CGAAATCGGATGAATAAACGGCGAGAATGGCATTTGTGCGTGAAATTATATCAGTTTTTA
TGTGAACAAGTGCATATTTCTTACAACGAATTCGCTTTGTGACCTTTAGTGCAATAGATT
AATTCAAAACAACGAAGTGTACAACAATGTGCCGGTTTCGCGAGTTTTTGTGCAGGAAAT
TTTTGAAGTGACTGCTCAGGGTGGTTTCCCGTGGTTAGGTTTCGCTGCGCCGTGCAATAA
TGGATAGGCTTCCCGCTTACATCGTTGGAATTTAAAACATTCGCTTCAGAAACGGAATGG
ATGAGGGTCTGTTAAACGACCTGCTTGAGTGCTCCGTTTGTCTGGAGCGGCTCGATACCT
CCTCCAGAGTACTGCCCTGTCAGCACACTTTCTGCCTTAAGTGTTTAAAGGTGATAGTCG
AATCGCATAAGGAGCTGCGTTGTCCAGAATGTCGCATCCTCGTCGAGACGAAGGTCGAGG
ACCTCCCCCCGAACGTCCTCCTCATGAGGATACTCGAGGGCATGAGGAATTCGGCGCCGA
AGAAGGGCACTGGCGTTGGACAAAGGATCAGAGCTGCCCATTTGCAGGGACAGCAAGGCA
CACAAACGACTCGTGACGGCAAACAGTTACCGCCACACGCCAGAGCCATGTACGATTATA
TCTCCAAGGAACCTGGAGATCTATCGTTCAAGAAAGGCGAAACGATATTGCTGCAGAAGA
AGTTGGACGCGTTCTGGTATCAAGGTGAATGTTCCGGGCGAACTGGAATGTTTCCGATCA
CTTTTGTGCAGGTTGTCGTCCAATTACCTGTAGCGACAGCTCTTTGCAAAGCGTTGTACG
ACTTCCGAATGTCAGCCCCTGATGAAGAAGGATGCCTAGCTTTCGATAAAGGAGCAATAA
TAACGGTGCACCGTCGCGTTGATGACAACTGGGCTGAAGGGAGACTCGATAACAGAATCG
GGATCTTTCCTATAGCCTTCGTGGAACTCAACCAAGCTGCCAGACAACTAATTAACTGTA
CACCCTTAAACCGTCCCGTACCACCGATACCAGAACAAGCAAGAGCCGGCCATTCTGAAC
ACAGACATCACTCACAACACCCACATAGATACCAACCGATGTCAGTTTCAACGCCAGCAA
CATCGCAAGCCAACTACCAAAACATGGCCAACATGAGCCAATCGCACCCCAACTACCACC
CCACACTATTGGTCCAACAACCGCAAATATTGGCCACGCACTCCGGCCTCATCACAACGC
CACCGAGAAACATAATCGAGCAACAGGCCAAGAATTCCCTAGATCTGATACATTTTAACA
AAGGAGCTTGTATACAGAGTGTTTCACGTATCAGTGATGTGAATTACGATAGAATGCGAG
TCAAATTCGATTATAATTCGACTCCGGTGCACAAAGTCGACTCAACATACCAAAATATAA
GAGCTCCGGTGTCCAACAATCAAAGTTCTGACTCCAGTTCCAGTGTGAACACCCCGTCAG
TCGGTGCAAGTACCAACACAACACCCAACACAAGTTCAGACACCAGCACATGTGAGAGCA
ACGAGCCAAGTCTACCGTCTTCACCAGACAACAACACTGAACGACCGATGCCAGAAAACG
AACTCAACTCATCGTTAGGTGTCCTAAGTTTAAATGAGAGCTCAACGGCCACTAATACAT
CATTGAACGTGACTTTGCCCCCATCGGAGAGCCCTAAATTGAATAATGAGGAGACTGAGG
TTGGACTGGATGCCCCTTCGTCTAGTAAGACAGTCAGGCCCAGTGGACCGGATTCCTTGT
TGAATTTCGGGTTAGGGCTCCAAGCGGCGCTGTCGCCCTCTCACGGACAAGACGGGAACT
ACATGAGGAACCATAGAGAACACAGAGAGAAGAGACACAGTTTGACGCCGTCGACGCATC
TGCAGAGTAATCATAATACGCAGAATAGACACTCAGCGGAGATATTGGCGACGAGCCTGC
TGGACGCGGCGCCGGAGGGCCGCAGACGGCGCCGCTCCCGGTCCAGCGAGCGGCCGCTGC
CCGCGCACTACATCGCGCTGTATCCATACAAACCGCACAAACCTGACGAACTGGAGCTCA
CTAAAGGAGTGGTGTACACAGTAACAGAACGTTGTAGAGACGGCTGGTACAAGGGATTCT
CGGAGAGGAACCAGCGCGCGGGAGTGTTCCCCGGGAACTATGTAGCACCGCATAGAACTA
AACATGATAAGAGTGTATCGGGTGTGAAGGTGCTGACGTCAGGGCCTCCGCCCCCGCCCG
ACGCGCCCCCTAGGGCTCCCTCGCCGGTCCTCGCACAAGCTCAGCCTCTCACTTATCCGT
GGAACGCTCAATCACTGCAGCAAACCACACCGAGATCTGATAAGGCGAAAGACAAAACGA
AACCGGACAAGTGTTCTCTATCGAGCGGCGTCAGTCTGATGAAGCGCTGGGCCGCCATGA
AGAAGTGCAAGTCTCCACCACCCGCCGCCTACAGCATCGACAACCCGGTGTTCGAGGACG
GACCCTCGCGGCTGCTGGATGTACCTCTGCACCCGCAGCATGTCAGGTCCAATGAGAGTC
CATGGCAAACCCAACACAGGAAGTCGCAGTCTCTCGACGTGACAGCTACGAAGAAGGACC
GACATCACTCTCAAACTGTCAAAGAAAGATTCCGCTGCATAGTTCCCTACCCACCGAATT
CGGAATACGAGCTAGAATTAAAAATTGACGATATTGTTATCGTCTCAAAGAAACGCGGCG
ACGGCTGGTACAAAGGTACTCTACAGCGTAATGGACGAACAGGACTGTTCCCGGCTTCCT
T
(2821 bp)

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