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Last updated: 2022/11/18

Bombyx mori Assembled RNA-Seq Entry

NameA_TrvaFAMAMG_TR17659c0_g1_i1
Scaffold_id
NCBI non-redundant
(nr)		Nep1_protein_[Bombyx_mori]
Ontology
GO:0000462 P maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0003723 F RNA binding
GO:0005515 F protein binding
GO:0005634 C nucleus
GO:0005654 C nucleoplasm
GO:0005730 C nucleolus
GO:0005737 C cytoplasm
GO:0006364 P rRNA processing
GO:0008168 F methyltransferase activity
GO:0016740 F transferase activity
GO:0019843 F rRNA binding
GO:0032040 C small-subunit processome
GO:0032259 P methylation
GO:0042254 P ribosome biogenesis
GO:0042274 P ribosomal small subunit biogenesis
GO:0044822 F RNA binding
GO:0070037 F rRNA (pseudouridine) methyltransferase activity
GO:0070475 P rRNA base methylation
Transcript
Level		FPKM:1.31 TPM:1.29
ORF EntryO_TrvaFAMAMG21148_complete:A_TrvaFAMAMG_TR17659c0_g1_i1
Sequence
(Nucleotide)
TTTTTGAATAAAATATGTTTTATTTATCAAAAATATTTATTACTCTACTCCCCAAACCTC
CTCAAAAGCTGAACACAGTTTAGCACATGTTAGTGCTGCTGATAAGGGATAATTACTAAT
TGATATTACATCTTCTGAATAATCCACCTCAACTTTTCCATGTGCCATAGCTCCTATGAC
CATCACAATCGGTTCATCTTTAGGTACAAGCTCTCTGCAGTTCTGAACTACTTTTGAGCT
GAAGGACATAGTTATTTTCTTAGCTCCAACTGGCAAATGTGATGTTACAGGATTCTTGAT
AACTTTTAAAAGCTTCATTGGTCCATCTGATGCTCTGATTGCAAACTTGTGCAGAAGTTG
AACCATTAATCCTGCAAATCGCTTAAATGTTCTAGGTATTCTAGTCTGTGGATTAATTTC
AATCAATACATTTTTTTCCGTGTGTATATAGACTTGCAGTAAACCAGCTCTGTTCAAAGG
AGAGTCCATCAACATAAGCAGTGACTGATGAGTGATATCAGGCCTGCAGGATCCAGGATC
ACGGTCATTTTTGCGTAAAATATGGGCATGATCATCACAGTTCAATAATTCAAAACTATT
ACCATTATTTAATGTTAGAACATCGATATTTCCTTTCAAAATCTTTTGATTTTATTCATA
ATAATTTGAACGGAATAAACAAAACATTAATTTCCGTTCCACGTGCTTCTTGACAGTTGA
CTATCTTGACACTTGACGTTTGATGCAGCAGAACATTTGACATTTACACTGAACACGACT
CATCCGTTCCAACCTTTTTTGCTCAAGAACACAAGTCCAATCAAACTGTAG
(831 bp)

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